View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20177_high_25 (Length: 357)
Name: NF20177_high_25
Description: NF20177
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20177_high_25 |
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Alignment Details
Target: chr2 (Bit Score: 280; Significance: 1e-157; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 17 - 342
Target Start/End: Original strand, 37148036 - 37148358
Alignment:
| Q |
17 |
attagttataagtaatttgaagggtcacttatataagaaaaaatcaaatctaaattcaacagtgactcataaaatttatcctttaaatgaatttagcttt |
116 |
Q |
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| T |
37148036 |
attagttgtaagtaatttgaagggtcacttatataagaaaaaatcaaatctaaattcaacagtgactcataaaatttatcctttaaatgaatttagcttt |
37148135 |
T |
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| Q |
117 |
gggcatgagcaattttgcatgaaattttacagccaatataattatagcactcaaacatactcaaagtaggtaatcatgtacaatgtgtgtgtatataccc |
216 |
Q |
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| T |
37148136 |
gggcatgagcaattttgcatgaaattttacagccagtataattatagcactcaaacatactcaaagtaggtaatcatgtacaatgtgtgtgtatataccc |
37148235 |
T |
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| Q |
217 |
ggaaatgtggtcacttttcttaactatttttcaacttcttcttgtaacaaaaaatatcaaaaagggctaactcttatttggcatgttatagtttgaaaga |
316 |
Q |
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| T |
37148236 |
ggaaatgtggtctcttttcttaactatttttcaa---cttcttgtaataaaaaacatcgaaaagggctaactcttatttggcatattatagtttgaaaga |
37148332 |
T |
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| Q |
317 |
tttgggaggcaagaaatgtggttatt |
342 |
Q |
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| T |
37148333 |
tttgggaggcacgaaatgtggttatt |
37148358 |
T |
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