View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20177_high_30 (Length: 320)
Name: NF20177_high_30
Description: NF20177
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20177_high_30 |
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Alignment Details
Target: chr2 (Bit Score: 182; Significance: 2e-98; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 118 - 310
Target Start/End: Original strand, 9874258 - 9874451
Alignment:
| Q |
118 |
gttgaatcaatgttgcaaaatgtcatacatagttcatctttgttgggatcttacttgtgatttctttactttatttaatgtggatttacttacttaatta |
217 |
Q |
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| T |
9874258 |
gttgaatcaatgttgcaaaatgtcatacatagttcatctttgttgggatcttacttgtgatttctttactttatttaatgtggatttacttacttaatta |
9874357 |
T |
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| Q |
218 |
ggaatatttatctacatatatatttaccatatccattatttaattgaattatcaatga-ttttttgttgtcactagttcttgtctttccctttg |
310 |
Q |
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| T |
9874358 |
ggaatatttatctacatatatatttaccatatccattatttaattgaattatcaatgatttttttgttgtcactagttcttgtctttctctttg |
9874451 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 1 - 119
Target Start/End: Original strand, 9874105 - 9874223
Alignment:
| Q |
1 |
cttccataaattctcatactcattgctgaatcacataaatcatcacaaacacacacatattgttcattatttattggtgagtttcttctttctttgctct |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
9874105 |
cttccataaattctcatactcattgctgaatcacataaatcatcacaaacacacacatattgttcattatttattgatgagtttcttctttctttgctct |
9874204 |
T |
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| Q |
101 |
ttagttgcttaatttctgt |
119 |
Q |
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| T |
9874205 |
ttagttgcttaatttctgt |
9874223 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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