View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20177_high_31 (Length: 320)
Name: NF20177_high_31
Description: NF20177
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20177_high_31 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 318
Target Start/End: Original strand, 23121860 - 23122172
Alignment:
| Q |
1 |
catgaaaatttgaatcattttagaagcatagagtatgatataagattatttaaaagtattagcaaatgggtatataaaaaattgtctactatttgttatc |
100 |
Q |
| |
|
|||| ||||||||| |||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
23121860 |
catggaaatttgaaccattttagaagcatagggtatgatataagattatttaaaagtgttagcaaatgggtatataaaaaattatctactatttgttatc |
23121959 |
T |
|
| Q |
101 |
tatctatctataacattaaaccgagacatgagaagggaaaacacaaataattaaattgataaattagtattccaccacatgtattccattatgaacatgt |
200 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
23121960 |
----tatctataacaataaaccgagacatgagaagggaaaacacaaataattaaattgataaattagtattctaccacatgtattccattatgaacatgt |
23122055 |
T |
|
| Q |
201 |
gcttcaaaaacatcttccatttattaaatgattnnnnnnnnncaacaacttgatca---tgtactccctgaatgcacccaaaataagaataatcaaagag |
297 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||| | ||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
23122056 |
gcttcaaaaacatcttccatttattaaatgattcaaaaa----aacaacttgattatgttgtactcccagaatgcacccaaaataagaataatcaaagag |
23122151 |
T |
|
| Q |
298 |
gataaaataacaaaaagtgga |
318 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
23122152 |
gataaaataacaaaaagtgga |
23122172 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 317
Target Start/End: Complemental strand, 22630717 - 22630406
Alignment:
| Q |
1 |
catgaaaatttgaatcattttagaagcatagagtatgatataagattatttaaaagtattagcaaatgggtatataaaaaattgtctactatttgttatc |
100 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
22630717 |
catggaaatttgaatcattttagaagcatagagtatgatataagattatttaaaagtgttagcaaatgggtatataaaaaattatctactatttgttatc |
22630618 |
T |
|
| Q |
101 |
tatctatctataacattaaaccgagacatgagaagggaaaacacaaataattaaattgataaattagtattccaccacatgtattccattatgaacatgt |
200 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
22630617 |
tatctat----aacattaaaccgagacatgagaagggaaaacacaaataattaaattgataaattagtattctaccacatgtattccattatgaacatgt |
22630522 |
T |
|
| Q |
201 |
gcttcaaaaacatcttccatttattaaatgattnnnnnnnnncaacaacttgatca---tgtactccctgaatgcacccaaaataagaataatcaaagag |
297 |
Q |
| |
|
| ||||||||||||||||||||||||||||||| || |||||||||| |||||| ||||||||||||||||||| ||||||| |||||| |
|
|
| T |
22630521 |
gtttcaaaaacatcttccatttattaaatgattaaaaaa----aataacttgatcatgttgtacttcctgaatgcacccaaaataggaataattaaagag |
22630426 |
T |
|
| Q |
298 |
gataaaataacaaaaagtgg |
317 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
22630425 |
gataaaataacaaaaagtgg |
22630406 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University