View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20177_high_48 (Length: 257)
Name: NF20177_high_48
Description: NF20177
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20177_high_48 |
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Alignment Details
Target: chr8 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 1 - 243
Target Start/End: Original strand, 1423181 - 1423423
Alignment:
| Q |
1 |
cattcttgtttgttgtgaaaggtcattagcatgactatttctaatgaaagtgtggcaccagaaaaaatggaggtatagttagtatgattcattttccttt |
100 |
Q |
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| T |
1423181 |
cattcttgtttgttgtgaaaggtcattagcatgactatttctaatgaaagtgtggcaccagaaaaaatggaggtatagttagtatgaatcattttccttt |
1423280 |
T |
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| Q |
101 |
tcatcattagtttttcttttgcatgaaataactagaatcattttgctactagcaggggaaattccaagcgaagttaatatgtttcattcttggagctgga |
200 |
Q |
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| T |
1423281 |
tcatcattagtttttcttttgcatgaaataactagaatcattttgctactagcaggggaaattccaagcgaagttaatatgtttcattcttggagctgga |
1423380 |
T |
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| Q |
201 |
tccctcattgcactaaacaacttgtggacaatgggagattact |
243 |
Q |
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| T |
1423381 |
tccctcattgcactaaacaacttgtggacaatgggagattact |
1423423 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 122; Significance: 1e-62; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 42 - 232
Target Start/End: Complemental strand, 2817092 - 2816906
Alignment:
| Q |
42 |
taatgaaagtgtggcaccagaaaaaatggaggtatagttagtatgattcattttccttttcatcattagtttttcttttgcatgaaataactagaatcat |
141 |
Q |
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| T |
2817092 |
taatgaaagtgtggcaccagaaaaaatagaggtatagt----atgaatcattttccttttcatcattagattttcttttgcataaaataactgcaagcat |
2816997 |
T |
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| Q |
142 |
tttgctactagcaggggaaattccaagcgaagttaatatgtttcattcttggagctggatccctcattgcactaaacaacttgtggacaat |
232 |
Q |
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| T |
2816996 |
tttgctactagcaggggaaattccgagcaaagtttatatgtttcattcttggagttggatccctcattgccctaaacaacatgtggacaat |
2816906 |
T |
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