View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20177_high_5 (Length: 537)
Name: NF20177_high_5
Description: NF20177
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20177_high_5 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 396; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 1 - 523
Target Start/End: Original strand, 18444383 - 18444897
Alignment:
| Q |
1 |
tcctcggcatttcaaaatacaaagacaaggagatccttctctgagcacaagctcatagtgataattatgtcaatttgttatcaagttgcatcatgttann |
100 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18444383 |
tcctcggtatttcaaaatacaaagacaaggagatccttctctgggcacaagctcatagtgataattatgtcaatttgttatcaagttgcatcatgttatt |
18444482 |
T |
|
| Q |
101 |
nnnnngtcttatcaaatcaacttacacctgttattgatgaacctagacacatttccatatgtagtagaagcaatgacatatcgggcatgtccctcgacca |
200 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18444483 |
tttttgtcttatcaaatcaatttacacctgttattgatgaacctagacacatttccatatgtagtagaagcaatgacatatcgggcatgtccctc----- |
18444577 |
T |
|
| Q |
201 |
atctattcatatggttaacacgagcattgatatcaaacaaattactgcaattttctttgctatatctggtattaaaataggccaagtcagtaaaaaggaa |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18444578 |
-------catatggttaacacgagcattgatatcaaacaaattactgcaattttctttgctatatctggtattaaaataggccaagtcagtaaaaaggaa |
18444670 |
T |
|
| Q |
301 |
gaaacatcaagcaaccaagagaagaaactacatcttggaagaaatgtaaaccttccacgtctgttttgtgcctcctgctatttgaaaacttcacaaatgt |
400 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18444671 |
gaaacatcaagcaaccaaaagaagaaactacatcttggaagaaatgtaaaccttcggcgtctgttttgtgcctcctgctatttgaaaacttcacaaatgt |
18444770 |
T |
|
| Q |
401 |
gctcacacatgaacgtgccatgcaaaat----agcctcaccagcctttacttcccatccatgttaatcggataacaatcgtcaacataaaaagccttttg |
496 |
Q |
| |
|
|| |||||||||||||||| ||||||| |||||||| || | ||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
18444771 |
gcgcacacatgaacgtgccgcgcaaaatagccagcctcacaagtccttacttcccatccatgtgaatcggataacaatcgtcaacataaaaagccttttg |
18444870 |
T |
|
| Q |
497 |
agagtcattgtgaatttattaaaagaa |
523 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
18444871 |
agagtcattgtgaatttattaaaagaa |
18444897 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 125 - 523
Target Start/End: Original strand, 33486491 - 33486889
Alignment:
| Q |
125 |
cacctgttattgatgaacctagacacatttccatatgtagtagaagcaatgacatatcgggcatgtccctcgaccaatctattcatatggttaacacgag |
224 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||| |||||||||||| || |||||||| |||||| |
|
|
| T |
33486491 |
cacctgttattgatgaacctagacacatttccatatgtagtagaatcaatgacatatcggggatgtccttcgaccaatctactcgtatggttagcacgag |
33486590 |
T |
|
| Q |
225 |
cattgatatcaaacaaattactgcaattttctttgctatatctggtattaaaataggccaagtcagtaaaaaggaagaaacatcaagcaaccaagagaag |
324 |
Q |
| |
|
||| || || || |||| |||||||||||||||||||||| ||||||||||| |||||||||||| ||||||||||||||||||||||| ||| ||||| |
|
|
| T |
33486591 |
catcaatgtctaagaaataactgcaattttctttgctatatttggtattaaaacaggccaagtcagcaaaaaggaagaaacatcaagcaaacaaaagaag |
33486690 |
T |
|
| Q |
325 |
aaactacatcttggaagaaatgtaaaccttccacgtctgttttgtgcctcctgctatttgaaaacttcacaaatgtgctcacacatgaacgtgccatgca |
424 |
Q |
| |
|
||| ||| |||||||| ||||||||||||||| |||||||| ||||||||||||| | |||||||||| ||||| |||||||| ||||||||| ||| |
|
|
| T |
33486691 |
aaattacgtcttggaataaatgtaaaccttccgcgtctgttgtgtgcctcctgctgctctaaaacttcaccaatgtactcacacacaaacgtgccacgca |
33486790 |
T |
|
| Q |
425 |
aaatagcctcaccagcctttacttcccatccatgttaatcggataacaatcgtcaacataaaaagccttttgagagtcattgtgaatttattaaaagaa |
523 |
Q |
| |
|
||||||| ||||||||| ||||| | |||| ||| |||| |||||||| |||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
33486791 |
aaatagcttcaccagcccttactccgaatccctgtgaatcagataacaaacgtcaacataaaaagctttttgagagtcattgtgaatttattaaaagaa |
33486889 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 125 - 455
Target Start/End: Original strand, 33514849 - 33515176
Alignment:
| Q |
125 |
cacctgttattgatgaacctagacacatttccatatgtagtagaagcaatgacatatcgggcatgtccctcgaccaatctattcatatggttaacacgag |
224 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||| || | || |||| ||||| | |||||| |||||||||| |
|
|
| T |
33514849 |
cacctgttattgatgaacctagacacatttccatatctagtagaatcaatgacatatcgagcctctctttcgatcaatcgactcatatcattaacacgag |
33514948 |
T |
|
| Q |
225 |
cattgatatcaaacaaattactgcaattttctttgctatatctggtattaaaataggccaagtcagtaaaaaggaagaaacatcaagcaaccaagagaag |
324 |
Q |
| |
|
||| | |||| | |||| | ||||| |||||| | |||||||||||| | | || ||| ||||||||||| ||||| |||||| |||| || | | |
|
|
| T |
33514949 |
catcaacatcatagaaataatcgcaatgttcttttccatatctggtattgacacagaccatgtcagtaaaaattaagaatcatcaaccaactaa---atg |
33515045 |
T |
|
| Q |
325 |
aaactacatcttggaagaaatgtaaaccttccacgtctgttttgtgcctcctgctatttgaaaacttcacaaatgtgctcacacatgaacgtgccatgca |
424 |
Q |
| |
|
||| || |||||| |||||||||||||||| |||||||||| ||||||| |||| | ||||| || | ||||| |||||||| || ||||| || |
|
|
| T |
33515046 |
aaattatatcttgaaagaaatgtaaacctttcacgtctgttgcgtgcctcttgctcgtctaaaacctctccaatgtactcacacacaaatgtgccgcgcg |
33515145 |
T |
|
| Q |
425 |
aaatagcctcaccagcctttacttcccatcc |
455 |
Q |
| |
|
|||||||||||| |||| |||| ||||||| |
|
|
| T |
33515146 |
aaatagcctcacaagcccttacaccccatcc |
33515176 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 49; Significance: 9e-19; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 145 - 455
Target Start/End: Original strand, 55444334 - 55444641
Alignment:
| Q |
145 |
agacacatttccatatgtagtagaagcaatgacatatcgggcatgtccctcgaccaatctattcatatggttaacacgagcattgatatcaaacaaatta |
244 |
Q |
| |
|
|||||||||||||||| |||||||| |||||| |||| |||| |||| |||| ||||| | |||| | ||||||||||||| | | || | |||| | |
|
|
| T |
55444334 |
agacacatttccatatctagtagaatcaatgatatattgggcctgtctttcgatcaatcgactcatgtcattaacacgagcatcaacaacatagaaataa |
55444433 |
T |
|
| Q |
245 |
ctgcaattttctttgctatatctggtattaaaataggccaagtcagtaaaaaggaagaaacatcaagcaaccaagagaagaaactacatcttggaagaaa |
344 |
Q |
| |
|
||||||| ||||| | ||| |||||||| | |||| ||| ||||||||||| ||||||||||| |||| || || |||||| |||||| |||||| |
|
|
| T |
55444434 |
ctgcaatgttcttctccataactggtattgacatagaccatgtcagtaaaaatccagaaacatcaaccaactaa---aataaactatatcttgaaagaaa |
55444530 |
T |
|
| Q |
345 |
tgtaaaccttccacgtctgttttgtgcctcctgctatttgaaaacttcacaaatgtgctcacacatgaacgtgccatgcaaaatagcctcaccagccttt |
444 |
Q |
| |
|
| |||||||| | |||||| |||||||| |||| || ||||| || | ||||| |||||||| || || || || |||||||||| |||||| || |
|
|
| T |
55444531 |
tttaaaccttttgcatctgttgtgtgcctcttgctcttctaaaacctctccaatgtactcacacacaaatgttccgcgcgaaatagcctcgccagccctt |
55444630 |
T |
|
| Q |
445 |
acttcccatcc |
455 |
Q |
| |
|
|| ||||||| |
|
|
| T |
55444631 |
acaccccatcc |
55444641 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 19 - 67
Target Start/End: Original strand, 55443668 - 55443716
Alignment:
| Q |
19 |
acaaagacaaggagatccttctctgagcacaagctcatagtgataatta |
67 |
Q |
| |
|
|||||||||||||||||||| || || ||||||||||||||||||||| |
|
|
| T |
55443668 |
acaaagacaaggagatccttttccaagaacaagctcatagtgataatta |
55443716 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University