View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20177_high_6 (Length: 535)

Name: NF20177_high_6
Description: NF20177
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20177_high_6
NF20177_high_6
[»] chr5 (4 HSPs)
chr5 (332-427)||(21012013-21012109)
chr5 (329-427)||(29632594-29632693)
chr5 (329-427)||(21654547-21654646)
chr5 (380-427)||(10647749-10647796)
[»] chr3 (15 HSPs)
chr3 (332-427)||(32793231-32793327)
chr3 (332-427)||(50833604-50833700)
chr3 (332-427)||(50842153-50842249)
chr3 (445-508)||(14174275-14174338)
chr3 (445-511)||(951725-951791)
chr3 (379-427)||(50833760-50833808)
chr3 (379-427)||(50833825-50833873)
chr3 (379-427)||(50841980-50842028)
chr3 (379-427)||(50842045-50842093)
chr3 (328-422)||(16980972-16981067)
chr3 (453-491)||(14174358-14174396)
chr3 (333-424)||(48761952-48762044)
chr3 (376-427)||(1273697-1273748)
chr3 (380-427)||(9640246-9640293)
chr3 (376-426)||(48760757-48760807)
[»] chr2 (6 HSPs)
chr2 (329-427)||(13067156-13067255)
chr2 (332-427)||(40915477-40915573)
chr2 (329-426)||(15930903-15931001)
chr2 (208-321)||(13066994-13067106)
chr2 (380-427)||(4814603-4814649)
chr2 (354-427)||(9059877-9059950)
[»] chr1 (4 HSPs)
chr1 (329-425)||(48538558-48538655)
chr1 (332-427)||(24535404-24535500)
chr1 (329-426)||(39179965-39180063)
chr1 (208-321)||(48538705-48538817)
[»] chr4 (5 HSPs)
chr4 (332-427)||(50232993-50233089)
chr4 (329-427)||(42998638-42998737)
chr4 (329-427)||(42999231-42999330)
chr4 (381-427)||(1663573-1663619)
chr4 (379-419)||(43605642-43605682)
[»] chr7 (5 HSPs)
chr7 (339-427)||(18418404-18418493)
chr7 (448-511)||(40723767-40723830)
chr7 (333-427)||(18478630-18478725)
chr7 (379-427)||(23485480-23485527)
chr7 (381-427)||(24764953-24764999)
[»] scaffold0007 (1 HSPs)
scaffold0007 (445-511)||(258721-258787)
[»] scaffold0421 (1 HSPs)
scaffold0421 (329-427)||(4569-4668)
[»] chr8 (1 HSPs)
chr8 (345-425)||(5242685-5242766)
[»] chr6 (2 HSPs)
chr6 (329-427)||(7015465-7015564)
chr6 (333-424)||(5169674-5169766)
[»] scaffold1598 (1 HSPs)
scaffold1598 (333-424)||(892-984)
[»] scaffold0246 (1 HSPs)
scaffold0246 (369-423)||(11383-11438)


Alignment Details
Target: chr5 (Bit Score: 73; Significance: 4e-33; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 332 - 427
Target Start/End: Original strand, 21012013 - 21012109
Alignment:
Q  332 ttagggttaacactaacaacaattaatgcaccaattttagagggaaatttt-agggttaagtgattgctaacctaataacattaaggagtaagggat 427  Q
    ||||||||||||||||||||||||||| || || ||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  21012013 ttagggttaacactaacaacaattaatacaacattttgagagggaaatttttagggttaagtgattgctaacctaataacattaaggagtaagggat 21012109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 329 - 427
Target Start/End: Original strand, 29632594 - 29632693
Alignment:
Q  329 tttttagggttaacactaacaacaattaatgcaccaattttagagggaaatttt-agggttaagtgattgctaacctaataacattaaggagtaagggat 427  Q
    |||||||||| ||||||||||||||||||||||  |  |||||||||||||||| ||||||||||| |||| ||||||||||||||||||||||||||||    
T  29632594 tttttagggtcaacactaacaacaattaatgcattagatttagagggaaatttttagggttaagtgtttgcaaacctaataacattaaggagtaagggat 29632693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 329 - 427
Target Start/End: Complemental strand, 21654646 - 21654547
Alignment:
Q  329 tttttagggttaacactaacaacaattaatgcaccaattttagaggg-aaattttagggttaagtgattgctaacctaataacattaaggagtaagggat 427  Q
    |||||||||||||||||||||| |||||||||| ||  ||||||||| ||| | ||||||| |||| ||||  |||||||||||||||||||||||||||    
T  21654646 tttttagggttaacactaacaataattaatgcatcagatttagagggaaaaatgtagggtttagtgtttgcacacctaataacattaaggagtaagggat 21654547  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 380 - 427
Target Start/End: Original strand, 10647749 - 10647796
Alignment:
Q  380 tttagggttaagtgattgctaacctaataacattaaggagtaagggat 427  Q
    |||||||||||||  |||||||||||| ||| ||||||||||||||||    
T  10647749 tttagggttaagttgttgctaacctaacaactttaaggagtaagggat 10647796  T

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Target: chr3 (Bit Score: 73; Significance: 4e-33; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 332 - 427
Target Start/End: Original strand, 32793231 - 32793327
Alignment:
Q  332 ttagggttaacactaacaacaattaatgcaccaattttagagggaaatttt-agggttaagtgattgctaacctaataacattaaggagtaagggat 427  Q
    ||||||||||||||||||||||||||| || || ||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  32793231 ttagggttaacactaacaacaattaatacaacattttgagagggaaatttttagggttaagtgattgctaacctaataacattaaggagtaagggat 32793327  T

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Target: chr3; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 332 - 427
Target Start/End: Original strand, 50833604 - 50833700
Alignment:
Q  332 ttagggttaacactaacaacaattaatgcaccaattttagagggaaatttt-agggttaagtgattgctaacctaataacattaaggagtaagggat 427  Q
    ||||||||||||||||||||||||||| || || ||| |||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  50833604 ttagggttaacactaacaacaattaatacaacattttgagagagaaatttttagggttaagtgattgctaacctaataacattaaggagtaagggat 50833700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 332 - 427
Target Start/End: Complemental strand, 50842249 - 50842153
Alignment:
Q  332 ttagggttaacactaacaacaattaatgcaccaattttagagggaaatttt-agggttaagtgattgctaacctaataacattaaggagtaagggat 427  Q
    ||||||||||||||||||||||||||| || || ||| |||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  50842249 ttagggttaacactaacaacaattaatacaacattttgagagagaaatttttagggttaagtgattgctaacctaataacattaaggagtaagggat 50842153  T

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Target: chr3; HSP #4
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 445 - 508
Target Start/End: Original strand, 14174275 - 14174338
Alignment:
Q  445 attttccataagtgggtaagaaagattcattcacactatcatctgattagttaatacgtcaaaa 508  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||    
T  14174275 attttccataagtgcgtaagaaagattcattcacactatcatctgattagttaaaacgtcaaaa 14174338  T

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Target: chr3; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 445 - 511
Target Start/End: Original strand, 951725 - 951791
Alignment:
Q  445 attttccataagtgggtaagaaagattcattcacactatcatctgattagttaatacgtcaaaagag 511  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||| ||||| ||||||||||||    
T  951725 attttccataagtgcgtaagaaagattcattcacactatcatctgattggttaaaacgtcaaaagag 951791  T

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Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 379 - 427
Target Start/End: Complemental strand, 50833808 - 50833760
Alignment:
Q  379 ttttagggttaagtgattgctaacctaataacattaaggagtaagggat 427  Q
    ||||||||||||||| |||| |||||||||||||||| |||||||||||    
T  50833808 ttttagggttaagtgtttgcaaacctaataacattaaagagtaagggat 50833760  T

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Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 379 - 427
Target Start/End: Complemental strand, 50833873 - 50833825
Alignment:
Q  379 ttttagggttaagtgattgctaacctaataacattaaggagtaagggat 427  Q
    ||||||||||||||| |||| |||||||||||||||| |||||||||||    
T  50833873 ttttagggttaagtgtttgcaaacctaataacattaacgagtaagggat 50833825  T

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Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 379 - 427
Target Start/End: Original strand, 50841980 - 50842028
Alignment:
Q  379 ttttagggttaagtgattgctaacctaataacattaaggagtaagggat 427  Q
    ||||||||||||||| |||| |||||||||||||||| |||||||||||    
T  50841980 ttttagggttaagtgtttgcaaacctaataacattaacgagtaagggat 50842028  T

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Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 379 - 427
Target Start/End: Original strand, 50842045 - 50842093
Alignment:
Q  379 ttttagggttaagtgattgctaacctaataacattaaggagtaagggat 427  Q
    ||||||||||||||| |||| |||||||||||||||| |||||||||||    
T  50842045 ttttagggttaagtgtttgcaaacctaataacattaaagagtaagggat 50842093  T

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Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 328 - 422
Target Start/End: Complemental strand, 16981067 - 16980972
Alignment:
Q  328 atttttagggttaacactaacaacaattaatgcaccaattttagagggaa-attttagggttaagtgattgctaacctaataacattaaggagtaa 422  Q
    ||||||||||||||||||||||  | ||||||||  |  |||||||  ||  |||||||||||||  ||||| |||||||||||||||||||||||    
T  16981067 atttttagggttaacactaacagaagttaatgcatgagatttagagaaaattttttagggttaagcaattgcaaacctaataacattaaggagtaa 16980972  T

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Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 453 - 491
Target Start/End: Original strand, 14174358 - 14174396
Alignment:
Q  453 taagtgggtaagaaagattcattcacactatcatctgat 491  Q
    |||||| ||||||||||||||||||||||||||||||||    
T  14174358 taagtgcgtaagaaagattcattcacactatcatctgat 14174396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 333 - 424
Target Start/End: Complemental strand, 48762044 - 48761952
Alignment:
Q  333 tagggttaacactaacaacaattaatgcaccaattttagagggaaatt-ttagggttaagtgattgctaacctaataacattaaggagtaagg 424  Q
    |||||||| |||| |||||  ||||||||  |  |||||||||||||| |||||||| |||| |||| |||||||||| ||||| ||||||||    
T  48762044 tagggttatcactgacaacgtttaatgcaatagatttagagggaaattattagggtttagtggttgcaaacctaataatattaaagagtaagg 48761952  T

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Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 376 - 427
Target Start/End: Complemental strand, 1273748 - 1273697
Alignment:
Q  376 aaattttagggttaagtgattgctaacctaataacattaaggagtaagggat 427  Q
    ||||||||||||| ||||||||| |||||||||||||| | || ||||||||    
T  1273748 aaattttagggtttagtgattgcaaacctaataacatttaagaataagggat 1273697  T

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Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 380 - 427
Target Start/End: Complemental strand, 9640293 - 9640246
Alignment:
Q  380 tttagggttaagtgattgctaacctaataacattaaggagtaagggat 427  Q
    |||||||||||||  |||||||||||| ||| ||||||||||||||||    
T  9640293 tttagggttaagttgttgctaacctaacaactttaaggagtaagggat 9640246  T

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Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 376 - 426
Target Start/End: Complemental strand, 48760807 - 48760757
Alignment:
Q  376 aaattttagggttaagtgattgctaacctaataacattaaggagtaaggga 426  Q
    |||||||||||||||||  |||||||||||| |||  ||||||||||||||    
T  48760807 aaattttagggttaagttgttgctaacctaacaactctaaggagtaaggga 48760757  T

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Target: chr2 (Bit Score: 72; Significance: 2e-32; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 329 - 427
Target Start/End: Original strand, 13067156 - 13067255
Alignment:
Q  329 tttttagggttaacactaacaacaattaatgcaccaattttagagggaaatttt-agggttaagtgattgctaacctaataacattaaggagtaagggat 427  Q
    ||||||||||||| ||||||  ||||||||| |||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  13067156 tttttagggttaatactaacggcaattaatgaaccagttttagagggaaatttttagggttaagtgattgctaacctaataacattaaggagtaagggat 13067255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 332 - 427
Target Start/End: Original strand, 40915477 - 40915573
Alignment:
Q  332 ttagggttaacactaacaacaattaatgcaccaattttagagggaaatttt-agggttaagtgattgctaacctaataacattaaggagtaagggat 427  Q
    ||||||||||||||||||||||||||| || || ||| |||||||| |||| |||||||||||||||||||||||| ||||||||||||||||||||    
T  40915477 ttagggttaacactaacaacaattaatacaacattttgagagggaattttttagggttaagtgattgctaacctaacaacattaaggagtaagggat 40915573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 329 - 426
Target Start/End: Original strand, 15930903 - 15931001
Alignment:
Q  329 tttttagggttaacactaacaacaattaatgcaccaattttagagggaaatttt-agggttaagtgattgctaacctaataacattaaggagtaaggga 426  Q
    |||||||||||| |||||| |||||||||||||    ||||||||||||||||| |||||||| || |||| ||||||||||||||||||| |||||||    
T  15930903 tttttagggttagcactaagaacaattaatgcattggttttagagggaaatttttagggttaaatgtttgcaaacctaataacattaaggaataaggga 15931001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 208 - 321
Target Start/End: Original strand, 13066994 - 13067106
Alignment:
Q  208 ttggaaaccgaaaaaggaggctgagtggagagattttctgttttccaaaccgaacagcaattggcgcaaataaatgcaattcattgtatcagcattctat 307  Q
    |||||||| |||||  |||||||||||||||||||| |||||||||| || | | || | | || ||||||||||||||||||||||||||| | | |||    
T  13066994 ttggaaactgaaaagagaggctgagtggagagattt-ctgttttccatacggcatagaattaggtgcaaataaatgcaattcattgtatcagaaatttat 13067092  T
Q  308 aaaaatggcacgtt 321  Q
     |||||||||||||    
T  13067093 caaaatggcacgtt 13067106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 380 - 427
Target Start/End: Complemental strand, 4814649 - 4814603
Alignment:
Q  380 tttagggttaagtgattgctaacctaataacattaaggagtaagggat 427  Q
    |||||||||||||| |||| |||||||||| |||||||||||||||||    
T  4814649 tttagggttaagtgtttgc-aacctaataaaattaaggagtaagggat 4814603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 354 - 427
Target Start/End: Original strand, 9059877 - 9059950
Alignment:
Q  354 ttaatgcaccaattttagagggaaatttt-agggttaagtgattgctaacctaataacattaaggagtaagggat 427  Q
    |||||||  |||||||||||  ||||||| ||||||||||  |||| |||||||||| |||||||||||||||||    
T  9059877 ttaatgctgcaattttagagtcaaatttttagggttaagttgttgc-aacctaataagattaaggagtaagggat 9059950  T

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Target: chr1 (Bit Score: 70; Significance: 3e-31; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 329 - 425
Target Start/End: Complemental strand, 48538655 - 48538558
Alignment:
Q  329 tttttagggttaacactaacaacaattaatgcaccaattttagagggaaatttt-agggttaagtgattgctaacctaataacattaaggagtaaggg 425  Q
    ||||||||||||||||||||  ||||||||| | || ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  48538655 tttttagggttaacactaacggcaattaatgaaacagttttagagggaaatttttagggttaagtgattgctaacctaataacattaaggagtaaggg 48538558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 332 - 427
Target Start/End: Original strand, 24535404 - 24535500
Alignment:
Q  332 ttagggttaacactaacaacaattaatgcaccaattttagagggaaatttta-gggttaagtgattgctaacctaataacattaaggagtaagggat 427  Q
    ||||||||||||||||||||||||||| || || ||| |||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||    
T  24535404 ttagggttaacactaacaacaattaatacaacattttgagagggaaattttttgggttaagtgattgctaacctaataacattaaggagtaagggat 24535500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 329 - 426
Target Start/End: Complemental strand, 39180063 - 39179965
Alignment:
Q  329 tttttagggttaacactaacaacaattaatgcaccaattttagagggaaatt-ttagggttaagtgattgctaacctaataacattaaggagtaaggga 426  Q
    |||||||||||| ||| ||||||| ||||||||  |  |||||||||||||| |||||||| |||| |||| |||||||||||||||||||||||||||    
T  39180063 tttttagggttatcaccaacaacatttaatgcaaaagatttagagggaaattattagggtttagtggttgcaaacctaataacattaaggagtaaggga 39179965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 208 - 321
Target Start/End: Complemental strand, 48538817 - 48538705
Alignment:
Q  208 ttggaaaccgaaaaaggaggctgagtggagagattttctgttttccaaaccgaacagcaattggcgcaaataaatgcaattcattgtatcagcattctat 307  Q
    |||||||| |||||  |||||||||||||||||||| |||||||||| || | | || | | || ||||||||||||||||||||||||||| | | |||    
T  48538817 ttggaaactgaaaagagaggctgagtggagagattt-ctgttttccatacggcatagaattaggtgcaaataaatgcaattcattgtatcagaaatttat 48538719  T
Q  308 aaaaatggcacgtt 321  Q
     |||||||||||||    
T  48538718 caaaatggcacgtt 48538705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 65; Significance: 2e-28; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 332 - 427
Target Start/End: Original strand, 50232993 - 50233089
Alignment:
Q  332 ttagggttaacactaacaacaattaatgcaccaattttagagggaaatttt-agggttaagtgattgctaacctaataacattaaggagtaagggat 427  Q
    ||||||||||||||||||||||||||| || || ||| || | |||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  50232993 ttagggttaacactaacaacaattaatacaacattttgagcgagaaatttttagggttaagtgattgctaacctaataacattaaggagtaagggat 50233089  T

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Target: chr4; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 329 - 427
Target Start/End: Original strand, 42998638 - 42998737
Alignment:
Q  329 tttttagggttaacactaacaacaattaatgcaccaattttagagggaaa-ttttagggttaagtgattgctaacctaataacattaaggagtaagggat 427  Q
    |||||||||||||||||||||||||||||||||  |  |||||||||||| ||||||||||||||| ||||  |||||||||||||||||||||||||||    
T  42998638 tttttagggttaacactaacaacaattaatgcataagatttagagggaaatttttagggttaagtgtttgcagacctaataacattaaggagtaagggat 42998737  T

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Target: chr4; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 329 - 427
Target Start/End: Original strand, 42999231 - 42999330
Alignment:
Q  329 tttttagggttaacactaacaacaattaatgcaccaattttagagggaaatttt-agggttaagtgattgctaacctaataacattaaggagtaagggat 427  Q
    ||||||||||||||||||||| |||||||||||  |  |||||||||||||||| ||||||||||| ||||  |||||||||||||||||||||||||||    
T  42999231 tttttagggttaacactaacagcaattaatgcataagatttagagggaaatttttagggttaagtgtttgcagacctaataacattaaggagtaagggat 42999330  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 381 - 427
Target Start/End: Original strand, 1663573 - 1663619
Alignment:
Q  381 ttagggttaagtgattgctaacctaataacattaaggagtaagggat 427  Q
    ||||||||||||  |||||||||||| ||| ||||||||||||||||    
T  1663573 ttagggttaagttgttgctaacctaacaactttaaggagtaagggat 1663619  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 379 - 419
Target Start/End: Original strand, 43605642 - 43605682
Alignment:
Q  379 ttttagggttaagtgattgctaacctaataacattaaggag 419  Q
    |||||||||||| || |||| ||||||||||||||||||||    
T  43605642 ttttagggttaattgtttgcaaacctaataacattaaggag 43605682  T

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Target: chr7 (Bit Score: 62; Significance: 2e-26; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 339 - 427
Target Start/End: Original strand, 18418404 - 18418493
Alignment:
Q  339 taacactaacaacaattaatgcaccaattttagagggaaatttt-agggttaagtgattgctaacctaataacattaaggagtaagggat 427  Q
    |||||||||||||||||||| || || ||| ||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||    
T  18418404 taacactaacaacaattaatacaacattttgagagggaaatttttagggttaagtgattgctaacctaacaacattaaggagtaagggat 18418493  T

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Target: chr7; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 448 - 511
Target Start/End: Complemental strand, 40723830 - 40723767
Alignment:
Q  448 ttccataagtgggtaagaaagattcattcacactatcatctgattagttaatacgtcaaaagag 511  Q
    ||||||||||| ||||||||||||||||||||||||||| ||||||||||| ||||||||||||    
T  40723830 ttccataagtgcgtaagaaagattcattcacactatcatttgattagttaaaacgtcaaaagag 40723767  T

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Target: chr7; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 333 - 427
Target Start/End: Complemental strand, 18478725 - 18478630
Alignment:
Q  333 tagggttaacactaacaacaattaatgcaccaattttagagggaaatt-ttagggttaagtgattgctaacctaataacattaaggagtaagggat 427  Q
    |||||||| ||| ||||||| ||||||||  |  |||||||||||||| |||||||| |||  |||| ||||||||||||||||||||||||||||    
T  18478725 tagggttatcaccaacaacatttaatgcaatagatttagagggaaattattagggtttagtagttgcaaacctaataacattaaggagtaagggat 18478630  T

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Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 379 - 427
Target Start/End: Complemental strand, 23485527 - 23485480
Alignment:
Q  379 ttttagggttaagtgattgctaacctaataacattaaggagtaagggat 427  Q
    ||||||||||||||| |||| |||||||||| |||||||||||||||||    
T  23485527 ttttagggttaagtgtttgc-aacctaataaaattaaggagtaagggat 23485480  T

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Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 381 - 427
Target Start/End: Complemental strand, 24764999 - 24764953
Alignment:
Q  381 ttagggttaagtgattgctaacctaataacattaaggagtaagggat 427  Q
    ||||||||||||  |||||||||||| ||| ||||||||||||||||    
T  24764999 ttagggttaagttgttgctaacctaacaactttaaggagtaagggat 24764953  T

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Target: scaffold0007 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 445 - 511
Target Start/End: Complemental strand, 258787 - 258721
Alignment:
Q  445 attttccataagtgggtaagaaagattcattcacactatcatctgattagttaatacgtcaaaagag 511  Q
    |||||||||||||| ||||||||||||||||||||||||||| ||||||||||| ||||||||||||    
T  258787 attttccataagtgtgtaagaaagattcattcacactatcatttgattagttaaaacgtcaaaagag 258721  T

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Target: scaffold0421 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: scaffold0421
Description:

Target: scaffold0421; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 329 - 427
Target Start/End: Complemental strand, 4668 - 4569
Alignment:
Q  329 tttttagggttaacactaacaacaattaatgcaccaattttagagggaaatttt-agggttaagtgattgctaacctaataacattaaggagtaagggat 427  Q
    |||||||||||| |||||| |||||||||||||    ||||||||||||||||| || |||||||| |||| ||||||||||||||||||| ||||||||    
T  4668 tttttagggttagcactaagaacaattaatgcattggttttagagggaaatttttagagttaagtgtttgcaaacctaataacattaaggaataagggat 4569  T

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Target: chr8 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 345 - 425
Target Start/End: Original strand, 5242685 - 5242766
Alignment:
Q  345 taacaacaattaatgcaccaattttagagggaaatttt-agggttaagtgattgctaacctaataacattaaggagtaaggg 425  Q
    |||||||||||||||||  |  |||||||||||||||| ||||||||||| |||| ||||||||||||||||||||||||||    
T  5242685 taacaacaattaatgcaatagatttagagggaaatttttagggttaagtgtttgcaaacctaataacattaaggagtaaggg 5242766  T

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Target: chr6 (Bit Score: 44; Significance: 8e-16; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 329 - 427
Target Start/End: Complemental strand, 7015564 - 7015465
Alignment:
Q  329 tttttagggttaacactaacaacaattaatgcaccaattttagagggaaatt-ttagggttaagtgattgctaacctaataacattaaggagtaagggat 427  Q
    |||||||| ||| ||||||||||| ||||| ||  |  |||||||||||||  |||||||| |||| |||| ||||||||||||||||||||||||||||    
T  7015564 tttttaggattatcactaacaacatttaatacaatagatttagagggaaataattagggtttagtggttgcaaacctaataacattaaggagtaagggat 7015465  T

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Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 333 - 424
Target Start/End: Complemental strand, 5169766 - 5169674
Alignment:
Q  333 tagggttaacactaacaacaattaatgcaccaattttagagggaaatt-ttagggttaagtgattgctaacctaataacattaaggagtaagg 424  Q
    |||||||| |||| |||||  ||||||||  |  |||||||||||||| |||||||| |||| |||| |||||||||| ||||||||||||||    
T  5169766 tagggttatcactgacaacgtttaatgcaatagatttagagggaaattattagggtttagtggttgcaaacctaataatattaaggagtaagg 5169674  T

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Target: scaffold1598 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold1598
Description:

Target: scaffold1598; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 333 - 424
Target Start/End: Complemental strand, 984 - 892
Alignment:
Q  333 tagggttaacactaacaacaattaatgcaccaattttagagggaaatt-ttagggttaagtgattgctaacctaataacattaaggagtaagg 424  Q
    |||||||| |||| |||||  ||||||||  |  |||||||||||||| |||||||| |||| |||| |||||||||| ||||| ||||||||    
T  984 tagggttatcactgacaacgtttaatgcaatagatttagagggaaattattagggtttagtggttgcaaacctaataatattaaagagtaagg 892  T

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Target: scaffold0246 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0246
Description:

Target: scaffold0246; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 369 - 423
Target Start/End: Complemental strand, 11438 - 11383
Alignment:
Q  369 tagagggaaatttt-agggttaagtgattgctaacctaataacattaaggagtaag 423  Q
    |||||||||||||| | ||||||||| |||  ||||||||||||||||||||||||    
T  11438 tagagggaaatttttaaggttaagtgtttgaaaacctaataacattaaggagtaag 11383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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