View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20177_high_7 (Length: 517)
Name: NF20177_high_7
Description: NF20177
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20177_high_7 |
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Alignment Details
Target: chr8 (Bit Score: 448; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 448; E-Value: 0
Query Start/End: Original strand, 20 - 506
Target Start/End: Original strand, 38771155 - 38771643
Alignment:
| Q |
20 |
tggttcattgattttactagtttcttgtgaagttttcttagcttcttcatgtgtttctgtcttcacaatctcttcagctgctgaatcagtgattttattt |
119 |
Q |
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| T |
38771155 |
tggttcattgattttactagtttcttgtgaagttttcttagcttcttcatgtgtttctgtcttcacaatctcttcagctgctgaatcagtgattttattt |
38771254 |
T |
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| Q |
120 |
tgcaatgaaggtttttcctcaacaactgcacattcttgttcagtagatggttcattg-tttttggtttcctgagatggtttttccaatgttggctcgttg |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
38771255 |
tgcaatgaaggtttttcctcaacaactgcacattcttgttcagtagatggttcattgttttttggtttcctgagatggtttttccaatgttggctcgttg |
38771354 |
T |
|
| Q |
219 |
cttttagcatcctccaaaggtttctctgtttccaatgtttcttctttcacagtttcctcagctttg-nnnnnnncattttcagtggaatcctttgcatct |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
38771355 |
cttttagcatcctccaaaggtttctctgtttccaatgtttcttctttcacagtttcctcagctttgttttttttcattttcagtggaatcctttgcatct |
38771454 |
T |
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| Q |
318 |
tcattctatacatggatagaatttgtgtgagaatgttaattgtttgtcaaatcaacaaaaagctaaatgatatttcattttctttctaaatcatcaaatc |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38771455 |
tcattctatacatggatagaatttgtgtgagaatgttaattgtttgtcaaatcaacaaaaagctaaatgatatttcattttctttctaaatcatcaaatc |
38771554 |
T |
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| Q |
418 |
aagagtttgaaccttgtgaatgaaacaaatgcagttgggagaggaaacccattaaaggcgatgaagccgatggatacttcatagttcat |
506 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38771555 |
aagagtttgaaccttgtgaatgaaacaaatgtagttgggagaggaaacccattaaaggcgatgaagccgatggatacttcatagttcat |
38771643 |
T |
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