View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20177_low_11 (Length: 482)
Name: NF20177_low_11
Description: NF20177
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20177_low_11 |
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Alignment Details
Target: chr2 (Bit Score: 435; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 435; E-Value: 0
Query Start/End: Original strand, 21 - 467
Target Start/End: Original strand, 36057092 - 36057538
Alignment:
| Q |
21 |
tactcaaaaactgaaataaatacttaaaacctataaaacttacataagatgaagagtcatcaaggtcatttttagatgcatgattttggacttgttagtt |
120 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36057092 |
tactcaaaaactgaaataaatacttaaaacctataaaacttacataagatgaagagtcatcaaggtcatttttagatgcatgattttggacttgttagtt |
36057191 |
T |
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| Q |
121 |
atcaattgtcaccaagggcagaatgccttgccggcaatgctgagaatccatatgtgcctcgtaattatcaagagatccatacctgaagtgattaggggct |
220 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
36057192 |
atcaattgtcaccaagggcagaatgccttgccggcaatgctgagaatccatacgtgcctcgtaattatcaagagatccatacctgaagtgattaggggtt |
36057291 |
T |
|
| Q |
221 |
cgattcctgagagcgaaagtttcaaaaagttcttttaaaccacatagcaattctttttcaagaatgataaggttgagataagtagtgttttatttaagct |
320 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36057292 |
cgattcctgagagcgaaagtttcaaaaagttcttttaaaccacatagcaattctttttcaagaatgataaggttgagataagtagtgttttatttaagct |
36057391 |
T |
|
| Q |
321 |
catttcaatgaatttataaaggtaaatgaaacataagggagtacttatagaaatgtctaatctcgcatcaaaactcaagacattgaagttagagtttcat |
420 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36057392 |
catttcaatgaatttataaaggtaaatgaaacataagggagtacttatagaaatgtctaatctcgcatcaaaactcaagacattgaagttagagtttcat |
36057491 |
T |
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| Q |
421 |
gaagaattgattgtgcacttgcctttgatttctctcccgacacattt |
467 |
Q |
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| T |
36057492 |
gaagaattgattgtgcacttggctttgatttctctcccgacacattt |
36057538 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 51; Significance: 5e-20; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 338 - 455
Target Start/End: Original strand, 28723708 - 28723826
Alignment:
| Q |
338 |
aaaggtaaatgaaacataagggagtacttatag-aaatgtctaatctcgcatcaaaactcaagacattgaagttagagtttcatgaagaattgattgtgc |
436 |
Q |
| |
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||||||||| | ||||||||||||||| ||| | ||||||||||||||||||||||||||||| || |||||||||| ||| |||||| || ||||||| |
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| T |
28723708 |
aaaggtaaagggaacataagggagtacatattggaaatgtctaatctcgcatcaaaactcaaggcactgaagttagaacttcctgaagatttaattgtgc |
28723807 |
T |
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| Q |
437 |
acttgcctttgatttctct |
455 |
Q |
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| ||| ||| |||||||| |
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| T |
28723808 |
atttggttttaatttctct |
28723826 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 280 - 458
Target Start/End: Complemental strand, 23070502 - 23070324
Alignment:
| Q |
280 |
aagaatgataaggttgagataagtagtgttttatttaagctcatttcaatgaatttataaaggtaaatgaaacataagggagtacttat-agaaatgtct |
378 |
Q |
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||||||||||||||||| | |||| |||||||| || || |||||||||| | | ||||||||| | ||||||||||| ||| | | |||||||||| |
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| T |
23070502 |
aagaatgataaggttgaaactagtattgttttatccaaacttatttcaatgagct-acaaaggtaaagggaacataagggaatacatcttagaaatgtct |
23070404 |
T |
|
| Q |
379 |
aatctcgcatcaaaactcaagacattgaagttagagtttcatgaagaattgattgtgcacttgcctttgatttctctccc |
458 |
Q |
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||||| || | ||||||||| || ||| ||||| ||| |||||| || |||||||||||| ||||||||||||||| |
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| T |
23070403 |
aatcttgccttcaaactcaaggcacggaatttagaacttcttgaagatttaattgtgcacttggttttgatttctctccc |
23070324 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 171 - 221
Target Start/End: Original strand, 25461738 - 25461788
Alignment:
| Q |
171 |
tatgtgcctcgtaattatcaagagatccatacctgaagtgattaggggctc |
221 |
Q |
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|||||||||| | |||||||| | ||||||||||||| ||||||||||||| |
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| T |
25461738 |
tatgtgcctcatgattatcaaaatatccatacctgaaatgattaggggctc |
25461788 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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