View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20177_low_12 (Length: 482)
Name: NF20177_low_12
Description: NF20177
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20177_low_12 |
 | |
|
| [»] scaffold0065 (1 HSPs) |
| | |
|
| [»] scaffold0741 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 351; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 18 - 467
Target Start/End: Complemental strand, 27540057 - 27539608
Alignment:
| Q |
18 |
gaaagaagcaagttcagacaaagaaagatacatgaattccaaggactgacaacccttcaaggaccggctcgtccctagcttttggaacaacaaatgacac |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||| ||||||||| |||||||||||||| |||||||||||||| |
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|
| T |
27540057 |
gaaagaagcaagttcagacaaagaaagatacatggattccaaggaccgacaacccttcagagaccggctcttccctagcttttggcacaacaaatgacac |
27539958 |
T |
|
| Q |
118 |
tactttcagcaccggatttt-gtggaagcggaaagggaaaccaatgatgaaattcaacaagatatacacgtttctgatcaagaaacagaagcagcaacga |
216 |
Q |
| |
|
|||| |||||||| ||||| |||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
27539957 |
tactc-cagcaccgaatttttgtggaagcagaaagggaaaccaatggtgaaattcaacaagatatacacgtttctgatcaagaaacataagcagcaacga |
27539859 |
T |
|
| Q |
217 |
ttcctctgcaaattgaattacatgatgcacacgaggagttagctcttgtcagatcagaggcagtgcccactactttaccgactcctatggggagccataa |
316 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||| |
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|
| T |
27539858 |
ttcctttgcaaattgaattacatgatgcacacgaggagttagctcttgtcagatcagaggcagtgcccactgctttaccgactcctatggggatccataa |
27539759 |
T |
|
| Q |
317 |
agaaacagaaacaacaactgtttcattgcaaattgaaacaattcagaaccaaggggaagcaattctgatccaagaggaaacacatgatgcgcatgagaga |
416 |
Q |
| |
|
|||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||| || |
|
|
| T |
27539758 |
agaaacagaaacaacaacggcttcattgcaaattgaaacaattcagaaccaaggggaagcaattccgatccaagaggaaacacatgatgcgcaggaggga |
27539659 |
T |
|
| Q |
417 |
gtagttcctgtcatatcagaggctgtgcccgcagttttaccgactcctatg |
467 |
Q |
| |
|
||||||||||||| ||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
27539658 |
gtagttcctgtcagatcagaggcagtgcccgcagttttaccgactcctatg |
27539608 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 23 - 233
Target Start/End: Complemental strand, 20304881 - 20304672
Alignment:
| Q |
23 |
aagcaagttcagacaaagaaagatacatgaattccaaggactgacaacccttcaaggaccggctcgtccctagcttttggaacaacaaatgacactactt |
122 |
Q |
| |
|
|||||||||||| ||| ||||||||| || |||||||||||| ||||||||||| ||| ||| || || ||| ||||| ||||| ||||||||| | |
|
|
| T |
20304881 |
aagcaagttcaggcaacgaaagatacttggattccaaggactaacaacccttcagggatcggttcttcaagagcatttggcgcaacacatgacacta-at |
20304783 |
T |
|
| Q |
123 |
tcagcaccggattttgtggaagcggaaagggaaaccaatgatgaaattcaacaagatatacacgtttctgatcaagaaacagaagcagcaacgattcctc |
222 |
Q |
| |
|
||||||||| | || | ||| |||||||||| |||||||| |||| |||||||| | || |||| ||||||||||||| | | | ||||||| |
|
|
| T |
20304782 |
tcagcaccgattcttatagaaaaggaaagggaagtaaatgatgatcttcagcaagatattcgttttactgagcaagaaacagaagtaatagcaattcctc |
20304683 |
T |
|
| Q |
223 |
tgcaaattgaa |
233 |
Q |
| |
|
||||||||||| |
|
|
| T |
20304682 |
tgcaaattgaa |
20304672 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 314; Significance: 1e-177; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 34 - 467
Target Start/End: Complemental strand, 16599894 - 16599462
Alignment:
| Q |
34 |
gacaaagaaagatacatgaattccaaggactgacaacccttcaaggaccggctcgtccctagcttttggaacaacaaatgacactactttcagcaccgga |
133 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||| |||||| ||| |||||| |||||||||||||| |||||||||||||||||| ||||| |||| |
|
|
| T |
16599894 |
gacaaagaaagatacatggattccaaggactgacaagccttcagggatcggctcttccctagcttttggcgcaacaaatgacactactt-cagcatcgga |
16599796 |
T |
|
| Q |
134 |
ttttgtggaagcggaaagggaaaccaatgatgaaattcaacaagatatacacgtttctgatcaagaaacagaagcagcaacgattcctctgcaaattgaa |
233 |
Q |
| |
|
||||||||||| |||||||||||| |||||||| |||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
16599795 |
ttttgtggaagtggaaagggaaacaaatgatgacattcaacaagatatacacgtttctgaccaagaaacagaagcagcaacaattcctctgcaaattgaa |
16599696 |
T |
|
| Q |
234 |
ttacatgatgcacacgaggagttagctcttgtcagatcagaggcagtgcccactactttaccgactcctatggggagccataaagaaacagaaacaacaa |
333 |
Q |
| |
|
||||||||||| |||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16599695 |
ttacatgatgcgcacgaggagttagctcttatcagatcagaggcagtgcccactgctttaccgactcctatggggagccataaagaaacagaaacaacaa |
16599596 |
T |
|
| Q |
334 |
ctgtttcattgcaaattgaaacaattcagaaccaaggggaagcaattctgatccaagaggaaacacatgatgcgcatgagagagtagttcctgtcatatc |
433 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| || ||| ||||| ||||||||| ||| |
|
|
| T |
16599595 |
cgacttcattgcaaattgaaacaattcagaaccaaggggaagcaattccgatccaagaggaaacacatgatgctcaggagggagtaattcctgtcagatc |
16599496 |
T |
|
| Q |
434 |
agaggctgtgcccgcagttttaccgactcctatg |
467 |
Q |
| |
|
|||||| ||||| |||||||||||||||||||| |
|
|
| T |
16599495 |
agaggcaatgccctcagttttaccgactcctatg |
16599462 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 83; Significance: 4e-39; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 18 - 144
Target Start/End: Original strand, 7654184 - 7654309
Alignment:
| Q |
18 |
gaaagaagcaagttcagacaaagaaagatacatgaattccaaggactgacaacccttcaaggaccggctcgtccctagcttttggaacaacaaatgacac |
117 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||| ||| || ||| ||||| |||||||| ||||||||||||| |
|
|
| T |
7654184 |
gaaagaagcaagtttagacaaagaaagatacatggattccaaggactgacaacccttcagggatcgactcttccctggcttttggcgcaacaaatgacac |
7654283 |
T |
|
| Q |
118 |
tactttcagcaccggattttgtggaag |
144 |
Q |
| |
|
||| ||||||||||||||||||||||| |
|
|
| T |
7654284 |
tac-ttcagcaccggattttgtggaag |
7654309 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 66; Significance: 6e-29; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 310 - 467
Target Start/End: Complemental strand, 15200305 - 15200148
Alignment:
| Q |
310 |
gccataaagaaacagaaacaacaactgtttcattgcaaattgaaacaattcagaaccaaggggaagcaattctgatccaagaggaaacacatgatgcgca |
409 |
Q |
| |
|
||||| |||||| ||||||| |||| | ||||||| |||||||| || |||| ||||||||||||||||||| | ||||||| |||| ||| |||||||| |
|
|
| T |
15200305 |
gccatcaagaaatagaaacagcaacagcttcattgaaaattgaagcatttcaaaaccaaggggaagcaattccggtccaagatgaaatacaggatgcgca |
15200206 |
T |
|
| Q |
410 |
tgagagagtagttcctgtcatatcagaggctgtgcccgcagttttaccgactcctatg |
467 |
Q |
| |
|
||| |||||||||||||| |||||||| || | ||||||||||||||||||||| |
|
|
| T |
15200205 |
agaggaagtagttcctgtcagatcagaggtagtagctgcagttttaccgactcctatg |
15200148 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 310 - 467
Target Start/End: Complemental strand, 15219390 - 15219233
Alignment:
| Q |
310 |
gccataaagaaacagaaacaacaactgtttcattgcaaattgaaacaattcagaaccaaggggaagcaattctgatccaagaggaaacacatgatgcgca |
409 |
Q |
| |
|
||||| |||||| ||||||| ||| | |||||||||||||||| || |||||||| ||||||||||||||| | ||||||| |||| ||| ||||||| |
|
|
| T |
15219390 |
gccatcaagaaatagaaacagcaatagcttcattgcaaattgaagcatttcagaactaaggggaagcaattccggtccaagatgaaatacaggatgcgcg |
15219291 |
T |
|
| Q |
410 |
tgagagagtagttcctgtcatatcagaggctgtgcccgcagttttaccgactcctatg |
467 |
Q |
| |
|
||| |||||||||||||| |||| |||| |||| ||||||||||| ||||||||| |
|
|
| T |
15219290 |
agaggaagtagttcctgtcagatcataggcagtgcttgcagttttaccaactcctatg |
15219233 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0065 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: scaffold0065
Description:
Target: scaffold0065; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 23 - 233
Target Start/End: Original strand, 41567 - 41776
Alignment:
| Q |
23 |
aagcaagttcagacaaagaaagatacatgaattccaaggactgacaacccttcaaggaccggctcgtccctagcttttggaacaacaaatgacactactt |
122 |
Q |
| |
|
|||||||||||| ||| ||||||||| || |||||||||| ||||||||||||| ||| ||| || || ||| ||||| ||||| || ||||||||| |
|
|
| T |
41567 |
aagcaagttcaggcaacgaaagatacttggattccaaggattgacaacccttcagggatcggttcttcaagagcatttggcgcaacagatcacactactt |
41666 |
T |
|
| Q |
123 |
tcagcaccggattttgtggaagcggaaagggaaaccaatgatgaaattcaacaagatatacacgtttctgatcaagaaacagaagcagcaacgattcctc |
222 |
Q |
| |
|
|| |||||| | || | ||| |||||||||| |||||||| ||||| |||||| | | ||| |||| ||||||||||||||| || ||||||||| |
|
|
| T |
41667 |
-caacaccggttcttatagaaaaggaaagggaagtaaatgatgatattcagcaagatcttcgtgttactgagcaagaaacagaagcaacagcgattcctc |
41765 |
T |
|
| Q |
223 |
tgcaaattgaa |
233 |
Q |
| |
|
||||||||||| |
|
|
| T |
41766 |
tgcaaattgaa |
41776 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0741 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: scaffold0741
Description:
Target: scaffold0741; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 23 - 234
Target Start/End: Original strand, 5583 - 5793
Alignment:
| Q |
23 |
aagcaagttcagacaaagaaagatacatgaattccaaggactgacaacccttcaaggaccggctcgtccctagcttttggaacaacaaatgacactactt |
122 |
Q |
| |
|
|||||||||||| ||| ||||||||| || |||| ||||||||||||||||||| ||| ||| || || ||| ||||| ||||| ||||||||| | |
|
|
| T |
5583 |
aagcaagttcaggcaacgaaagatacttggattcgaaggactgacaacccttcagggatcggttcttcaagagcatttggtgcaacacatgacacta-at |
5681 |
T |
|
| Q |
123 |
tcagcaccggattttgtggaagcggaaagggaaaccaatgatgaaattcaacaagatatacacgtttctgatcaagaaacagaagcagcaacgattcctc |
222 |
Q |
| |
|
||||||||| |||| | ||| |||||||||| |||||||| |||| |||||||| | ||| |||| ||||||||||||| | || | ||||||| |
|
|
| T |
5682 |
tcagcaccgatttttatagaaaaggaaagggaagtaaatgatgatcttcagcaagatattcgtgttactgagcaagaaacagaagtaacagcaattcctc |
5781 |
T |
|
| Q |
223 |
tgcaaattgaat |
234 |
Q |
| |
|
|||||||||||| |
|
|
| T |
5782 |
tgcaaattgaat |
5793 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 23 - 227
Target Start/End: Complemental strand, 37635608 - 37635405
Alignment:
| Q |
23 |
aagcaagttcagacaaagaaagatacatgaattccaaggactgacaacccttcaaggaccggctcgtccctagcttttggaacaacaaatgacactactt |
122 |
Q |
| |
|
|||||||||||| ||| ||||||||| || |||||||||||||||||||||||| ||| ||| || || ||| ||||| ||||| ||| ||||| | |
|
|
| T |
37635608 |
aagcaagttcaggcaacgaaagatacttggattccaaggactgacaacccttcagggatcggttcttcaagagcatttggcgcaacacatggcacta-at |
37635510 |
T |
|
| Q |
123 |
tcagcaccggattttgtggaagcggaaagggaaaccaatgatgaaattcaacaagatatacacgtttctgatcaagaaacagaagcagcaacgattcctc |
222 |
Q |
| |
|
||| ||||| |||| | ||| |||||||||| |||||||| ||||| |||||||| | ||| |||| || ||||||||| | |||| ||||||| |
|
|
| T |
37635509 |
tcaacaccgatttttatagaaaaggaaagggaagtaaatgatgatattcagcaagatattcgtgttactgagcagcaaacagaagtaacaacaattcctc |
37635410 |
T |
|
| Q |
223 |
tgcaa |
227 |
Q |
| |
|
||||| |
|
|
| T |
37635409 |
tgcaa |
37635405 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 23 - 233
Target Start/End: Original strand, 26176725 - 26176933
Alignment:
| Q |
23 |
aagcaagttcagacaaagaaagatacatgaattccaaggactgacaacccttcaaggaccggctcgtccctagcttttggaacaacaaatgacactactt |
122 |
Q |
| |
|
|||||||||||| ||| |||||||| || |||| ||||||||| ||||||||| ||| ||| || || ||| ||||| ||||| |||||||||| | |
|
|
| T |
26176725 |
aagcaagttcaggcaacaaaagatacttggattcgaaggactgaaaacccttcagggatcggttcttcaagagcatttggcgcaacacatgacactac-t |
26176823 |
T |
|
| Q |
123 |
tcagcaccggattttgtggaagcggaaagggaaaccaatgatgaaattcaacaagatatacacgtttctgatcaagaaacagaagcagcaacgattcctc |
222 |
Q |
| |
|
|||||||||| | || | ||| |||||||||| |||||| | ||||||||||||| | ||| |||| ||||||||||||| | || | ||||||| |
|
|
| T |
26176824 |
tcagcaccgggtcttatagaa-aggaaagggaagtaaatgataatcttcaacaagatattcgtgttactgagcaagaaacagaagtaacagcaattcctc |
26176922 |
T |
|
| Q |
223 |
tgcaaattgaa |
233 |
Q |
| |
|
| ||||||||| |
|
|
| T |
26176923 |
tacaaattgaa |
26176933 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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