View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20177_low_13 (Length: 479)
Name: NF20177_low_13
Description: NF20177
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20177_low_13 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 314; Significance: 1e-177; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 130 - 463
Target Start/End: Original strand, 11687709 - 11688042
Alignment:
| Q |
130 |
tttgctcgagccaagactctactttaagattggaattcagttcagcagatgcaatagagcagaacctgcaagcttctctttttatcttagttgacaagag |
229 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11687709 |
tttgctcgagccaagactctactttaagattggaattcagttcagcagatgcaatagagcagaacctgcaagcttctctttttatcttagttgacaagag |
11687808 |
T |
|
| Q |
230 |
attggacccaagatatatcaggctcttcaacattgtttccatgctcaaaagaggtatatctttgcgaacgaccaaagtcatttccgttaacggaccaatc |
329 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11687809 |
attggacccaagatatatcaggctcttcaacattgtttccatgctcaaaagtggtatatctcagcgaacgaccaaagtcatttccgttaacggaccaatc |
11687908 |
T |
|
| Q |
330 |
aggtttcccagtacgggatccccacttagaccaggagttaacagaccgacccaatgaaatggtactcggacagggctgtgagaaacagctcaagtcattt |
429 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
11687909 |
aggttttccagtacgggatccccacttagaccaggagttaacagaccgacccaatgaaatggtacccggacagggctgtgagaaacagctcaagtcattt |
11688008 |
T |
|
| Q |
430 |
agcatgtgctgctgaccatcaaagaggccattag |
463 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
11688009 |
agcatgtgctgctgaccatcaaagaggccattag |
11688042 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 116; E-Value: 8e-59
Query Start/End: Original strand, 143 - 445
Target Start/End: Original strand, 11753349 - 11753623
Alignment:
| Q |
143 |
agactctactttaagattggaattcagttcagcagatgcaatagagcagaacctgcaagcttctctttttatcttagttgacaagagattggacccaaga |
242 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||| | ||||||||||| |||||||||| ||||||||||| |||||||||||||||||| |
|
|
| T |
11753349 |
agactctacttgaagattggaattcagttcagcaga---------gtagaacctgcaaacttctctttt-atcttagttgagaagagattggacccaaga |
11753438 |
T |
|
| Q |
243 |
tatatcaggctcttcaacattgtttccatgctcaaaagaggtatatctttgcgaacgaccaaagtcatttccgttaacggaccaatcaggtttcccagta |
342 |
Q |
| |
|
|| |||||| ||||| ||||||||||||||| |||| |||||||||||| ||||||||||||||||||||||||| | |||| |
|
|
| T |
11753439 |
tagatcaggatcttcgtcattgtttccatgct------------------gcgatcgaccaaagtcacttccgttaacggaccaatcaggttttctagta |
11753520 |
T |
|
| Q |
343 |
cgggatccccacttagaccaggagttaacagaccgacccaatgaaatggtactcggacagggctgtgagaaacagctcaagtcatttagcatgtgctgct |
442 |
Q |
| |
|
|| |||||||| ||||||||||||||||||||||||| || |||||||| || |||| ||||||||||||||| || |||||||||||||||||||||| |
|
|
| T |
11753521 |
cgagatccccagttagaccaggagttaacagaccgactcactgaaatggcaccaggacggggctgtgagaaacaacttaagtcatttagcatgtgctgct |
11753620 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 14 - 134
Target Start/End: Original strand, 11687510 - 11687630
Alignment:
| Q |
14 |
atcatatacactgtaggaaaatgaacttgtaaacaaatgaagtaaagagttcttaaaatacaaatcaatgaatgaccaaaagtaaagggaataaaaaacg |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| || |
|
|
| T |
11687510 |
atcatatacactgtaggaaaatgaacttgtaaacaaatgaagtaaagagttcttaaaatacaaaacaatgaatgaccaaaagtaaagggaataaaaaccg |
11687609 |
T |
|
| Q |
114 |
attatcctctgcgaactttgc |
134 |
Q |
| |
|
||||||| ||||||||||||| |
|
|
| T |
11687610 |
attatccgctgcgaactttgc |
11687630 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 397 - 453
Target Start/End: Original strand, 9314205 - 9314261
Alignment:
| Q |
397 |
ggacagggctgtgagaaacagctcaagtcatttagcatgtgctgctgaccatcaaag |
453 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||| || |||||||| ||||||||| |
|
|
| T |
9314205 |
ggacggggctgtgagaaacagctcaagtcatttagtatctgctgctgcccatcaaag |
9314261 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 57 - 121
Target Start/End: Original strand, 11753178 - 11753242
Alignment:
| Q |
57 |
aaagagttcttaaaatacaaatcaatgaatgaccaaaagtaaagggaataaaaaacgattatcct |
121 |
Q |
| |
|
||||||||||||||||| ||| ||||||||||| |||| | ||| |||||||||||||||||||| |
|
|
| T |
11753178 |
aaagagttcttaaaatataaaacaatgaatgacaaaaattgaagcgaataaaaaacgattatcct |
11753242 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 220 - 373
Target Start/End: Original strand, 9313620 - 9313776
Alignment:
| Q |
220 |
ttgacaagagattggacccaagatatatcaggctcttcaacattgtttccatgctcaaaagaggtatatctttgcgaacgaccaaagtcatttccgttaa |
319 |
Q |
| |
|
|||||||| || ||||||||| || |||||||||||| |||||||||||||||||||||| || |||| || | |||| ||||||||| || | |
|
|
| T |
9313620 |
ttgacaagggaatggacccaacctacatcaggctcttctccattgtttccatgctcaaaagaagttgatctctgtgtttgaccgaagtcatttggattta |
9313719 |
T |
|
| Q |
320 |
cggaccaatcaggtttcccagtacgg---gatccccacttagaccaggagttaacag |
373 |
Q |
| |
|
| |||||||||| ||| ||| || || ||||||||||| |||||||||||||||| |
|
|
| T |
9313720 |
ccgaccaatcagcttttccaataggggatgatccccacttggaccaggagttaacag |
9313776 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University