View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20177_low_18 (Length: 442)

Name: NF20177_low_18
Description: NF20177
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20177_low_18
NF20177_low_18
[»] chr7 (5 HSPs)
chr7 (1-426)||(33601581-33602006)
chr7 (2-325)||(33601060-33601388)
chr7 (186-259)||(7244665-7244739)
chr7 (153-208)||(991700-991756)
chr7 (186-222)||(2176872-2176908)
[»] chr4 (6 HSPs)
chr4 (172-268)||(30668012-30668099)
chr4 (368-407)||(30668546-30668585)
chr4 (204-253)||(18011874-18011924)
chr4 (10-44)||(54426143-54426177)
chr4 (203-259)||(55547055-55547112)
chr4 (63-115)||(30668251-30668303)
[»] chr8 (2 HSPs)
chr8 (186-259)||(20672735-20672809)
chr8 (10-44)||(9130255-9130289)
[»] chr3 (3 HSPs)
chr3 (191-259)||(46407905-46407974)
chr3 (10-44)||(3845499-3845533)
chr3 (11-44)||(24684758-24684791)
[»] chr6 (4 HSPs)
chr6 (155-214)||(9027508-9027568)
chr6 (10-44)||(4163253-4163287)
chr6 (10-44)||(4224874-4224908)
chr6 (186-222)||(31672538-31672575)
[»] chr5 (2 HSPs)
chr5 (8-44)||(22209760-22209796)
chr5 (192-259)||(12521518-12521587)
[»] chr1 (2 HSPs)
chr1 (208-259)||(11893604-11893655)
chr1 (10-44)||(2295196-2295230)
[»] chr2 (5 HSPs)
chr2 (204-253)||(3067396-3067446)
chr2 (12-44)||(449949-449981)
chr2 (176-255)||(3227698-3227778)
chr2 (236-268)||(7103484-7103516)
chr2 (204-259)||(42817387-42817443)


Alignment Details
Target: chr7 (Bit Score: 406; Significance: 0; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 406; E-Value: 0
Query Start/End: Original strand, 1 - 426
Target Start/End: Complemental strand, 33602006 - 33601581
Alignment:
Q  1 ttcgaaaagagtctcataaaacttatgccagtagataagctcaatctaatccaaacagggtttagtttctttaagcattgtaattgtacctttggattaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  33602006 ttcgaaaagagtctcataaaacttatgccagtagataagctcaatctaatccaaacaggctttagtttctttaagcattgtaattgtacctttggattaa 33601907  T
Q  101 aattctaattgcatatccatacgtagattaattaaatgcttagtagcttacaacataagtgcttatcatgagttatttctacactaaaaaataaaataaa 200  Q
    ||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33601906 aattctaattgcatagccatacatagattaattaaatgcttagtagcttacaacataagtgcttatcatgagttatttctacactaaaaaataaaataaa 33601807  T
Q  201 gtcaaactgttttataagctattgtgaagactttatgaaaataagctaaaaacaacttagggatatgttgcaagttgtttcatgtcagaatttatatcta 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  33601806 gtcaaactgttttataagctattgtgaagactttatgaaaataagctaaaaacaacttaaggatatgttgcaagttgtttcatgtcagaatttatatcta 33601707  T
Q  301 taaatttttccagagcttcaatattgtttgatgtttattataagtgtcaatgtttcttctctggactatgagttgaatatggtggatactcttggtcacg 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  33601706 taaatttttccagagcttcaatattgtttgatgtttattataagtgtcaatgtttcttctcaggactatgagttgaatatggtggatactcttggtcacg 33601607  T
Q  401 ctgatttttagtggtgaggtaaattt 426  Q
    ||||||||||||||||||||||||||    
T  33601606 ctgatttttagtggtgaggtaaattt 33601581  T

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Target: chr7; HSP #2
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 2 - 325
Target Start/End: Complemental strand, 33601388 - 33601060
Alignment:
Q  2 tcgaaaagagtctcataaaacttatgccagtagataagctcaa----tctaatccaaacagggtttagtttctttaagcattgtaattgtacctttggat 97  Q
    ||||||||||||||| ||||||||||||| |||||||||||||    || | ||||||| || |||||||||||||||||| ||||||||||||||||||    
T  33601388 tcgaaaagagtctcacaaaacttatgccaatagataagctcaaataatcaattccaaaccggctttagtttctttaagcatagtaattgtacctttggat 33601289  T
Q  98 taaaattctaattgcatatccatacgtagattaattaaatgcttagtagcttacaacataagtgcttatcatgagttatttctacactaaaaaataaaat 197  Q
    | |||||||||||| ||| ||| || |||||||||||||  ||  ||||||| || ||||||||||||||||||||||||||||||||||||||||||||    
T  33601288 tgaaattctaattgaatagccaaacatagattaattaaacactcggtagcttgcagcataagtgcttatcatgagttatttctacactaaaaaataaaat 33601189  T
Q  198 aaagtcaaactgtttt-ataagctattgtgaagactttatgaaaataagctaaaaacaacttagggatatgttgcaagttgtttcatgtcagaatttata 296  Q
    |||||||||||||||| |||||||||||  |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33601188 aaagtcaaactgttttcataagctattgcaaagagtttatgaaaataagctaaaaacaacttagggatatgttgcaagttgtttcatgtcagaatttata 33601089  T
Q  297 tctataaatttttccagagcttcaatatt 325  Q
    |||||||||||||||| ||||| ||||||    
T  33601088 tctataaatttttccaaagctttaatatt 33601060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 186 - 259
Target Start/End: Original strand, 7244665 - 7244739
Alignment:
Q  186 aaaaaataaaataaagtcaaactgtttt-ataagctattgtgaagactttatgaaaataagctaaaaacaactta 259  Q
    |||| |||||| |||||||||||||||| |||||||||  || |||  ||||||||||||||| |||||||||||    
T  7244665 aaaagataaaagaaagtcaaactgttttcataagctatattggagagcttatgaaaataagctgaaaacaactta 7244739  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 153 - 208
Target Start/End: Original strand, 991700 - 991756
Alignment:
Q  153 acataagtgcttat-catgagttatttctacactaaaaaataaaataaagtcaaact 208  Q
    |||||||||||||| ||| ||||||||||  ||||||| ||||||||||| ||||||    
T  991700 acataagtgcttatgcataagttatttctctactaaaatataaaataaagacaaact 991756  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 186 - 222
Target Start/End: Original strand, 2176872 - 2176908
Alignment:
Q  186 aaaaaataaaataaagtcaaactgttttataagctat 222  Q
    |||| ||||||||||||||||||| ||||||||||||    
T  2176872 aaaagataaaataaagtcaaactgctttataagctat 2176908  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 172 - 268
Target Start/End: Complemental strand, 30668099 - 30668012
Alignment:
Q  172 gttatttctacactaaaaaataaaataaagtcaaactgtttt-ataagctattgtgaagactttatgaaaataagctaaaaacaacttagggatatgt 268  Q
    ||||||||||||| |||||||||||||||| |||||||| || |||||||| |          |||||||||||||||||||||||||||||||||||    
T  30668099 gttatttctacaccaaaaaataaaataaagccaaactgtcttcataagctact----------tatgaaaataagctaaaaacaacttagggatatgt 30668012  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 368 - 407
Target Start/End: Complemental strand, 30668585 - 30668546
Alignment:
Q  368 atgagttgaatatggtggatactcttggtcacgctgattt 407  Q
    |||||||||||||||||||||||| |||||||||||||||    
T  30668585 atgagttgaatatggtggatactcctggtcacgctgattt 30668546  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 204 - 253
Target Start/End: Original strand, 18011874 - 18011924
Alignment:
Q  204 aaactgtttt-ataagctattgtgaagactttatgaaaataagctaaaaac 253  Q
    |||||||||| |||||||||  |||||| ||||||||||||||||||||||    
T  18011874 aaactgttttcataagctatcttgaagagtttatgaaaataagctaaaaac 18011924  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 10 - 44
Target Start/End: Original strand, 54426143 - 54426177
Alignment:
Q  10 agtctcataaaacttatgccagtagataagctcaa 44  Q
    ||||||| |||||||||||||||||||||||||||    
T  54426143 agtctcacaaaacttatgccagtagataagctcaa 54426177  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 203 - 259
Target Start/End: Complemental strand, 55547112 - 55547055
Alignment:
Q  203 caaactgtttt-ataagctattgtgaagactttatgaaaataagctaaaaacaactta 259  Q
    ||||||||||| |||||||||  |||| | |||||| |||||||||||||||||||||    
T  55547112 caaactgttttcataagctatgctgaaaagtttatggaaataagctaaaaacaactta 55547055  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 63 - 115
Target Start/End: Complemental strand, 30668303 - 30668251
Alignment:
Q  63 tagtttctttaagcattgtaattgtacctttggattaaaattctaattgcata 115  Q
    ||||||||||||   | ||||||||||||||||||| ||||| ||||||||||    
T  30668303 tagtttctttaactgtagtaattgtacctttggattgaaattttaattgcata 30668251  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 186 - 259
Target Start/End: Original strand, 20672735 - 20672809
Alignment:
Q  186 aaaaaataaaataaagtcaaactg-ttttataagctattgtgaagactttatgaaaataagctaaaaacaactta 259  Q
    |||| ||||||||||||||||||| |||||||||||||  || |||  ||||||||||||||| |||||| ||||    
T  20672735 aaaagataaaataaagtcaaactgtttttataagctatcctggagagcttatgaaaataagctgaaaacagctta 20672809  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 10 - 44
Target Start/End: Complemental strand, 9130289 - 9130255
Alignment:
Q  10 agtctcataaaacttatgccagtagataagctcaa 44  Q
    ||||||| |||||||||||||||||||||||||||    
T  9130289 agtctcacaaaacttatgccagtagataagctcaa 9130255  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000006; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 191 - 259
Target Start/End: Complemental strand, 46407974 - 46407905
Alignment:
Q  191 ataaaataaagtcaaactgtttt-ataagctattgtgaagactttatgaaaataagctaaaaacaactta 259  Q
    ||||| |||||| |||||||||| |||||||||||||| ||  || ||||||||||||| ||||||||||    
T  46407974 ataaagtaaagttaaactgttttcataagctattgtgatgagcttgtgaaaataagctagaaacaactta 46407905  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 10 - 44
Target Start/End: Complemental strand, 3845533 - 3845499
Alignment:
Q  10 agtctcataaaacttatgccagtagataagctcaa 44  Q
    ||||||| |||||||||||||||||||||||||||    
T  3845533 agtctcacaaaacttatgccagtagataagctcaa 3845499  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 11 - 44
Target Start/End: Complemental strand, 24684791 - 24684758
Alignment:
Q  11 gtctcataaaacttatgccagtagataagctcaa 44  Q
    |||||| |||||||||||||||||||||||||||    
T  24684791 gtctcaaaaaacttatgccagtagataagctcaa 24684758  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000003; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 155 - 214
Target Start/End: Original strand, 9027508 - 9027568
Alignment:
Q  155 ataagtgcttatc-atgagttatttctacactaaaaaataaaataaagtcaaactgtttta 214  Q
    ||||||||||||| || || |||||||||| || || ||||||||||||||||||||||||    
T  9027508 ataagtgcttatctataagctatttctacaatagaagataaaataaagtcaaactgtttta 9027568  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 10 - 44
Target Start/End: Original strand, 4163253 - 4163287
Alignment:
Q  10 agtctcataaaacttatgccagtagataagctcaa 44  Q
    |||||| ||||||||||||||||||||||||||||    
T  4163253 agtctcgtaaaacttatgccagtagataagctcaa 4163287  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 10 - 44
Target Start/End: Original strand, 4224874 - 4224908
Alignment:
Q  10 agtctcataaaacttatgccagtagataagctcaa 44  Q
    |||||| ||||||||||||||||||||||||||||    
T  4224874 agtctcgtaaaacttatgccagtagataagctcaa 4224908  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 186 - 222
Target Start/End: Complemental strand, 31672575 - 31672538
Alignment:
Q  186 aaaaaataaaataaagtcaaactgtttt-ataagctat 222  Q
    |||||||||||||||||||||||||||| |||||||||    
T  31672575 aaaaaataaaataaagtcaaactgttttcataagctat 31672538  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 8 - 44
Target Start/End: Complemental strand, 22209796 - 22209760
Alignment:
Q  8 agagtctcataaaacttatgccagtagataagctcaa 44  Q
    ||||||||| |||||||||||||||||||||||||||    
T  22209796 agagtctcagaaaacttatgccagtagataagctcaa 22209760  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 192 - 259
Target Start/End: Original strand, 12521518 - 12521587
Alignment:
Q  192 taaaataaagtcaaactgtttt--ataagctattgtgaagactttatgaaaataagctaaaaacaactta 259  Q
    ||||||| ||||||||||||||  |||||||||| ||||||  ||||| ||||||||| |||||| ||||    
T  12521518 taaaatagagtcaaactgttttgtataagctattttgaagagcttatggaaataagctgaaaacagctta 12521587  T

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Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 208 - 259
Target Start/End: Complemental strand, 11893655 - 11893604
Alignment:
Q  208 tgttttataagctattgtgaagactttatgaaaataagctaaaaacaactta 259  Q
    ||||| |||||||||| |||||| |||||| ||||||||| |||||||||||    
T  11893655 tgtttcataagctattttgaagagtttatggaaataagctgaaaacaactta 11893604  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 10 - 44
Target Start/End: Original strand, 2295196 - 2295230
Alignment:
Q  10 agtctcataaaacttatgccagtagataagctcaa 44  Q
    ||||||| |||||||||||||||||||||||||||    
T  2295196 agtctcacaaaacttatgccagtagataagctcaa 2295230  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 204 - 253
Target Start/End: Complemental strand, 3067446 - 3067396
Alignment:
Q  204 aaactgtttt-ataagctattgtgaagactttatgaaaataagctaaaaac 253  Q
    |||||||||| |||||||||  |||||| ||||||||||||||||||||||    
T  3067446 aaactgttttcataagctatcttgaagagtttatgaaaataagctaaaaac 3067396  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 12 - 44
Target Start/End: Original strand, 449949 - 449981
Alignment:
Q  12 tctcataaaacttatgccagtagataagctcaa 44  Q
    ||||||||||||||||| |||||||||||||||    
T  449949 tctcataaaacttatgctagtagataagctcaa 449981  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 176 - 255
Target Start/End: Complemental strand, 3227778 - 3227698
Alignment:
Q  176 tttctacactaaaaaataaaataaagtcaaactgtttt-ataagctattgtgaagactttatgaaaataagctaaaaacaa 255  Q
    |||||| | |||||||||||| ||||| ||| |||||| |||||||||| || |||  || |||||||||||| |||||||    
T  3227778 tttctataataaaaaataaaacaaagttaaattgttttcataagctattttggagagattttgaaaataagctgaaaacaa 3227698  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 236 - 268
Target Start/End: Complemental strand, 7103516 - 7103484
Alignment:
Q  236 tgaaaataagctaaaaacaacttagggatatgt 268  Q
    |||||||||||||||||||||||| ||||||||    
T  7103516 tgaaaataagctaaaaacaacttatggatatgt 7103484  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 204 - 259
Target Start/End: Complemental strand, 42817443 - 42817387
Alignment:
Q  204 aaactgtttt-ataagctattgtgaagactttatgaaaataagctaaaaacaactta 259  Q
    |||||||||| |||||||||| ||||||  ||||| || ||||||||||||||||||    
T  42817443 aaactgttttcataagctattctgaagagcttatggaagtaagctaaaaacaactta 42817387  T

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