View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20177_low_2 (Length: 724)
Name: NF20177_low_2
Description: NF20177
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20177_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 306; Significance: 1e-172; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 352 - 714
Target Start/End: Complemental strand, 3015306 - 3014934
Alignment:
| Q |
352 |
atctgaattataaacgatacctttaaaatgccttgaaggatatctactcccaaaacaatggaatccttattgttgaagacagaattgggcatgatcttga |
451 |
Q |
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| T |
3015306 |
atctgaattataaatgatacctttaaaatgccttgaaggatatttactcccaaaacaatggaatccttattgttgaagacagaattgggcatgatcttga |
3015207 |
T |
|
| Q |
452 |
gaatgcaggcctcatcagcagaatctttcttgttctcatccttattgttgttcatgtgagtaatgttgttcctgtacctcttaaattgatcaaatagatg |
551 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| |||||||||||||||||||| |
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| T |
3015206 |
gaacgcaggcctcatcagcagaatctttcttgttctcatccttattgttgttcatgtgagtaatgttgtccttgtacctattaaattgatcaaatagatg |
3015107 |
T |
|
| Q |
552 |
atgcattttatcggagataaaaattttgacacccaatttatgtgcaagttgccaagcttcaggagtgactctggcaggaaacgccaatatagcagcatac |
651 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
3015106 |
atgcattttatcggagataaatattttgacacccaatttatgtgcaagttgccaagcttcaggggtgactctggcaggaaacgccaatatagcagcatac |
3015007 |
T |
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| Q |
652 |
tctggtttcttttcaagcattgcac----------tggccttctccacatccttcttatgtataggacctatg |
714 |
Q |
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| T |
3015006 |
tctggtttcttttcaagcattgcactggcttgcactggccttctccacatccttcttatgtataggacctatg |
3014934 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 32 - 326
Target Start/End: Complemental strand, 3015599 - 3015305
Alignment:
| Q |
32 |
cttttcaaatggccacgtgcaaaatgcaacgagggtttctactttcactacttgtagcaaggtacatggtgaagttcacataagtagggtggacgatgaa |
131 |
Q |
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| T |
3015599 |
cttttcaaatggccacgtgcaaaatgcaacgagggtttctactttcactacttgtagcaaggtacatggtgaaattcacataagtagggtggacgatgaa |
3015500 |
T |
|
| Q |
132 |
taagttgcacaacaatttcaatctcttttgctgtgccataaggtgtatataattttcattccaaaattttcacctccccgctttaacagcaggaggataa |
231 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
3015499 |
taagttgcacaacaatttcaatcttttttgctgtgccataaggtgtatataattttcattccaaaattttcacctccccgttttaacagcaggaggataa |
3015400 |
T |
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| Q |
232 |
acgtatccaaggccacaaaaaataacacagttgaatttacccccaatgcaagcaatacaatgttatgcaaagaaaacaagtatcgtcacaaacat |
326 |
Q |
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| T |
3015399 |
acgtatccaaggccacaaaaaataacacagttgaatttacccccaatgcaagcaatacaatgttatgcaaagaaaacaagtatcgtcacaaacat |
3015305 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 176; Significance: 2e-94; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 176; E-Value: 2e-94
Query Start/End: Original strand, 376 - 714
Target Start/End: Original strand, 40671533 - 40671853
Alignment:
| Q |
376 |
aaaatgccttgaaggatatctactcccaaaacaatggaatccttattgttgaagacagaattgggcatgatcttgagaatgcaggcctcatcagcagaat |
475 |
Q |
| |
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|||||||||||||||| |||||||||||||||||||| |||||||| |||||||||| |||| ||| |||||||||||| |||||||||||||||||||| |
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| T |
40671533 |
aaaatgccttgaaggacatctactcccaaaacaatgggatccttatggttgaagacaaaatttggcttgatcttgagaacgcaggcctcatcagcagaat |
40671632 |
T |
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| Q |
476 |
ctttcttgttctcatccttattgttgttcatgtgagtaatgttgttcctgtacctcttaaattgatcaaatagatgatgcattttatcggagataaaaat |
575 |
Q |
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| T |
40671633 |
ctttcttttgcgcctcctta------------------atgttgttcatgtaagtcttaaatcgatcaaatagatgatgcattttatcggagatgaaaat |
40671714 |
T |
|
| Q |
576 |
tttgacacccaatttatgtgcaagttgccaagcttcaggagtgactctggcaggaaacgccaatatagcagcatactctggtttcttttcaagcattgca |
675 |
Q |
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||||||||||||||| |||||||||||||||||| |||| ||||| |||||||||||||||| | | |||||||||||||||||||||||||||||||| |
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| T |
40671715 |
tttgacacccaatttgtgtgcaagttgccaagctccaggggtgaccatggcaggaaacgccaacacaacagcatactctggtttcttttcaagcattgca |
40671814 |
T |
|
| Q |
676 |
ctggccttctccacatccttcttatgtataggacctatg |
714 |
Q |
| |
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|||||||||||||||||||||||||| | |||||||||| |
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| T |
40671815 |
ctggccttctccacatccttcttatgaacaggacctatg |
40671853 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 81; Significance: 1e-37; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 367 - 714
Target Start/End: Complemental strand, 44607863 - 44607525
Alignment:
| Q |
367 |
gatacctttaaaatgccttgaaggatatctactcccaaaacaatggaatccttattgttgaagacagaattgggcatgatcttgagaatgcagg------ |
460 |
Q |
| |
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||||||||||||||||||| ||||||||| |||||||||| ||| | |||||| |||||||||||| |||| || |||||||| |||| ||| | |
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| T |
44607863 |
gatacctttaaaatgcctttaaggatatcaactcccaaaataatcggatccttcttgttgaagacacaatttggtatgatcttcagaacgcatggaaaga |
44607764 |
T |
|
| Q |
461 |
---cctcatcagcagaatctttcttgttctcatccttattgttgttcatgtgagtaatgttgttcctgtacctcttaaattgatcaaatagatgatgcat |
557 |
Q |
| |
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||||||||||||| |||||||| ||||| |||||| ||||| ||||| | |||| ||||||||||||||||||||| || |
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| T |
44607763 |
ctgcctcatcagcagattctttctttttctcctccttaatgttggccatgtaa----------------acct--taaattgatcaaatagatgataaat |
44607682 |
T |
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| Q |
558 |
tttatcggagataaaaattttgacacccaatttatgtgcaagttgccaagcttcaggagtgactctggcaggaaacgccaatatagcagcatactctggt |
657 |
Q |
| |
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|||||| ||||||||||| ||||||||||||| |||||||| | |||||||| |||||| || || |||||||||||||| || ||| ||| || |
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| T |
44607681 |
aatatcggcaataaaaattttcacacccaatttatctgcaagttccttagcttcagaggtgactttgacatcaaacgccaatatagtagaatattctcgt |
44607582 |
T |
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| Q |
658 |
ttcttttcaagcattgcactggccttctccacatccttcttatgtataggacctatg |
714 |
Q |
| |
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||||||||||||||| ||||||||||| ||||||||||||||||| ||| |||||| |
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| T |
44607581 |
ttcttttcaagcattacactggccttcatcacatccttcttatgtacagggcctatg |
44607525 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 273 - 703
Target Start/End: Complemental strand, 44629462 - 44629042
Alignment:
| Q |
273 |
cccaatgcaagcaatacaatgttatgcaaagaaaacaagtatcgtcacaaacattgcaaccacaatgagagaaaagattatctgaattataaacgat-ac |
371 |
Q |
| |
|
||||| |||||||||||||| ||||||| ||||||| |||| |||||||||||| ||||| ||| | |||| | ||||||||| ||| || || |
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| T |
44629462 |
cccaaggcaagcaatacaatcttatgcagagaaaactgctatcaatacaaacattgcatccacattgaaa--aaagttcgtctgaattaaaaagaattac |
44629365 |
T |
|
| Q |
372 |
ctttaaaatgccttgaaggatatctactcccaaaacaatggaatccttattgttgaagacagaattgggcatgatcttgagaatgcagg---------cc |
462 |
Q |
| |
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|||||||||||||| ||||||||| |||||||||||||| | |||||| |||||||||||| |||| || | |||||| |||| || | || |
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| T |
44629364 |
ctttaaaatgccttcaaggatatcaactcccaaaacaattggatccttcttgttgaagacacaatttggtaagatcttcagaacacatgggaagactgcc |
44629265 |
T |
|
| Q |
463 |
tcatcagcagaatctttcttgttctcatccttattgttgttcatgtgagtaatgttgttcctgtacctcttaaattgatcaaatagatgatgcattttat |
562 |
Q |
| |
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||||| ||||| |||||||| ||||| |||||| |||||| ||||| || ||||||||||||||||||||||| || ||| |
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| T |
44629264 |
tcatccgcagattctttctttttctcctccttaatgttgtccatgtaagc------------------cttaaattgatcaaatagatgataaatgatat |
44629183 |
T |
|
| Q |
563 |
cggagataaaaattttgacacccaatttatgtgcaagttgccaagcttcaggagtgactctggcaggaaacgccaatatagcagcatactctggtttctt |
662 |
Q |
| |
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||| |||||||| || |||||||||| | |||||| | || ||||||||| |||||| || || ||| |||||||||| |||||| ||| ||||||| |
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| T |
44629182 |
cggctataaaaatcttcacacccaattcctctgcaagatccctagcttcaggggtgactttgacatcaaatgccaatatagtagcatattctcgtttctt |
44629083 |
T |
|
| Q |
663 |
ttcaagcattgcactggccttctccacatccttcttatgta |
703 |
Q |
| |
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||||||||| ||||||||||| ||||||||||||||||| |
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|
| T |
44629082 |
ttcaagcatcacactggccttcatcacatccttcttatgta |
44629042 |
T |
|
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