View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20177_low_23 (Length: 402)

Name: NF20177_low_23
Description: NF20177
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20177_low_23
NF20177_low_23
[»] chr3 (11 HSPs)
chr3 (167-382)||(25659014-25659226)
chr3 (167-382)||(25665419-25665631)
chr3 (167-382)||(25671824-25672036)
chr3 (167-382)||(25678229-25678441)
chr3 (167-382)||(25684905-25685121)
chr3 (35-167)||(25659353-25659485)
chr3 (35-167)||(25665758-25665890)
chr3 (35-167)||(25672163-25672295)
chr3 (25-167)||(25678568-25678710)
chr3 (297-384)||(13002589-13002676)
chr3 (297-384)||(31252910-31252997)
[»] scaffold0029 (2 HSPs)
scaffold0029 (301-384)||(43042-43125)
scaffold0029 (301-384)||(18030-18113)
[»] chr2 (2 HSPs)
chr2 (301-384)||(33120275-33120358)
chr2 (301-384)||(33130018-33130101)


Alignment Details
Target: chr3 (Bit Score: 185; Significance: 1e-100; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 167 - 382
Target Start/End: Complemental strand, 25659226 - 25659014
Alignment:
Q  167 gctaaatataggcacatctctcggtctagatttgaacattgatttccatgtgttgtaggagactagcccattgtactatatccaaccacttttggtaaaa 266  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||  ||||||| |||||||||||||||||||||||||||||||||||||||    
T  25659226 gctaaatataggcacatctctcggtctagattcgaacattgatttccatgt--tgtagga-actagcccattgtactatatccaaccacttttggtaaaa 25659130  T
Q  267 tgatttatgaagtgcaacttttttcttcaccaattctaagctatattgaaaagaggagttttaagggaaggatttgcaaaagggccttcaactagtccct 366  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25659129 tgatgtatgaagtgcaacttttttcttcaccaattctaagctatattgaaaagaggagttttaagggaaggatttgcaaaagggccttcaactagtccct 25659030  T
Q  367 tcgctattaacttata 382  Q
    | ||||||||||||||    
T  25659029 ttgctattaacttata 25659014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 167 - 382
Target Start/End: Complemental strand, 25665631 - 25665419
Alignment:
Q  167 gctaaatataggcacatctctcggtctagatttgaacattgatttccatgtgttgtaggagactagcccattgtactatatccaaccacttttggtaaaa 266  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||  ||||||| |||||||||||||||||||||||||||||||||||||||    
T  25665631 gctaaatataggcacatctctcggtctagattcgaacattgatttccatgt--tgtagga-actagcccattgtactatatccaaccacttttggtaaaa 25665535  T
Q  267 tgatttatgaagtgcaacttttttcttcaccaattctaagctatattgaaaagaggagttttaagggaaggatttgcaaaagggccttcaactagtccct 366  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25665534 tgatgtatgaagtgcaacttttttcttcaccaattctaagctatattgaaaagaggagttttaagggaaggatttgcaaaagggccttcaactagtccct 25665435  T
Q  367 tcgctattaacttata 382  Q
    | ||||||||||||||    
T  25665434 ttgctattaacttata 25665419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 167 - 382
Target Start/End: Complemental strand, 25672036 - 25671824
Alignment:
Q  167 gctaaatataggcacatctctcggtctagatttgaacattgatttccatgtgttgtaggagactagcccattgtactatatccaaccacttttggtaaaa 266  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||  ||||||| |||||||||||||||||||||||||||||||||||||||    
T  25672036 gctaaatataggcacatctctcggtctagattcgaacattgatttccatgt--tgtagga-actagcccattgtactatatccaaccacttttggtaaaa 25671940  T
Q  267 tgatttatgaagtgcaacttttttcttcaccaattctaagctatattgaaaagaggagttttaagggaaggatttgcaaaagggccttcaactagtccct 366  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25671939 tgatgtatgaagtgcaacttttttcttcaccaattctaagctatattgaaaagaggagttttaagggaaggatttgcaaaagggccttcaactagtccct 25671840  T
Q  367 tcgctattaacttata 382  Q
    | ||||||||||||||    
T  25671839 ttgctattaacttata 25671824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 167 - 382
Target Start/End: Complemental strand, 25678441 - 25678229
Alignment:
Q  167 gctaaatataggcacatctctcggtctagatttgaacattgatttccatgtgttgtaggagactagcccattgtactatatccaaccacttttggtaaaa 266  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||  ||||||| |||||||||||||||||||||||||||||||||||||||    
T  25678441 gctaaatataggcacatctctcggtctagattcgaacattgatttccatgt--tgtagga-actagcccattgtactatatccaaccacttttggtaaaa 25678345  T
Q  267 tgatttatgaagtgcaacttttttcttcaccaattctaagctatattgaaaagaggagttttaagggaaggatttgcaaaagggccttcaactagtccct 366  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25678344 tgatgtatgaagtgcaacttttttcttcaccaattctaagctatattgaaaagaggagttttaagggaaggatttgcaaaagggccttcaactagtccct 25678245  T
Q  367 tcgctattaacttata 382  Q
    | ||||||||||||||    
T  25678244 ttgctattaacttata 25678229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 178; E-Value: 7e-96
Query Start/End: Original strand, 167 - 382
Target Start/End: Complemental strand, 25685121 - 25684905
Alignment:
Q  167 gctaaatataggcacatctctcggtctagatttgaacattgatttccatgtgttgtaggagactagcccattgtacta---tatccaaccacttttggta 263  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||  |||||||||||||||||||||||||   |||||||||||||||||||    
T  25685121 gctaaatataggcacatctctcggtctagattcgaacattgatttccatgt--tgtaggagactagcccattgtactactatatccaaccacttttggta 25685024  T
Q  264 aaatgatttatgaagtgcaacttttttcttcaccaattctaagctatattgaaaagaggagttttaagggaaggatttgcaaaagggccttcaactagtc 363  Q
    ||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25685023 aaatgatgtatgaagtgcaacttttttcttaaccaattctaagctatattgaaaagaggagttttaagggaaggatttgcaaaagggccttcaactagtc 25684924  T
Q  364 ccttcgctattaacttata 382  Q
    |||| ||||||||||||||    
T  25684923 cctttgctattaacttata 25684905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 35 - 167
Target Start/End: Complemental strand, 25659485 - 25659353
Alignment:
Q  35 atatactatgataaagtggagaaaaatctatattattcaaaaaataaagaatatcacataatacattcttttttaaagaacattgaagaatacatattgc 134  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||| |    
T  25659485 atatactatgataaagtggagaaaaatctatattattccaaaaataaagaatatcacataatacattattttttaaagaatattgaagaatacatatttc 25659386  T
Q  135 attcgattttcaatgataaattgttttttggag 167  Q
    |||||||||||||||||||||| ||||||||||    
T  25659385 attcgattttcaatgataaattattttttggag 25659353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 35 - 167
Target Start/End: Complemental strand, 25665890 - 25665758
Alignment:
Q  35 atatactatgataaagtggagaaaaatctatattattcaaaaaataaagaatatcacataatacattcttttttaaagaacattgaagaatacatattgc 134  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||| |    
T  25665890 atatactatgataaagtggagaaaaatctatattattccaaaaataaagaatatcacataatacattattttttaaagaatattgaagaatacatatttc 25665791  T
Q  135 attcgattttcaatgataaattgttttttggag 167  Q
    |||||||||||||||||||||| ||||||||||    
T  25665790 attcgattttcaatgataaattattttttggag 25665758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 35 - 167
Target Start/End: Complemental strand, 25672295 - 25672163
Alignment:
Q  35 atatactatgataaagtggagaaaaatctatattattcaaaaaataaagaatatcacataatacattcttttttaaagaacattgaagaatacatattgc 134  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||| |    
T  25672295 atatactatgataaagtggagaaaaatctatattattccaaaaataaagaatatcacataatacattattttttaaagaatattgaagaatacatatttc 25672196  T
Q  135 attcgattttcaatgataaattgttttttggag 167  Q
    |||||||||||||||||||||| ||||||||||    
T  25672195 attcgattttcaatgataaattattttttggag 25672163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 25 - 167
Target Start/End: Complemental strand, 25678710 - 25678568
Alignment:
Q  25 agttttaatgatatactatgataaagtggagaaaaatctatattattcaaaaaataaagaatatcacataatacattcttttttaaagaacattgaagaa 124  Q
    ||||| || |||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||  ||||||||||| |||||||||    
T  25678710 agtttcaaagatatattatgataaagtggagaaaaatctatattattccaaaaataaagaatatcacataatacattactttttaaagaatattgaagaa 25678611  T
Q  125 tacatattgcattcgattttcaatgataaattgttttttggag 167  Q
    |||||||| ||||||||||||||||||||||| ||||||||||    
T  25678610 tacatatttcattcgattttcaatgataaattattttttggag 25678568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 297 - 384
Target Start/End: Original strand, 13002589 - 13002676
Alignment:
Q  297 caattctaagctatattgaaaagaggagttttaagggaaggatttgcaaaagggccttcaactagtcccttcgctattaacttataag 384  Q
    |||||||||||||| |||||| ||| || ||| || ||||||| ||||||||||||||| | || ||| || ||||||  ||||||||    
T  13002589 caattctaagctatcttgaaaggagcaggttttagagaaggatatgcaaaagggccttcgattaatcctttagctatttgcttataag 13002676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 297 - 384
Target Start/End: Complemental strand, 31252997 - 31252910
Alignment:
Q  297 caattctaagctatattgaaaagaggagttttaagggaaggatttgcaaaagggccttcaactagtcccttcgctattaacttataag 384  Q
    |||||||||||||| |||||| ||| || ||| || ||||||| ||||||||||||||| | || ||| || ||||||  ||||||||    
T  31252997 caattctaagctatcttgaaaggagcaggttttagagaaggatatgcaaaagggccttcgattaatcctttagctatttgcttataag 31252910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 301 - 384
Target Start/End: Original strand, 43042 - 43125
Alignment:
Q  301 tctaagctatattgaaaagaggagttttaagggaaggatttgcaaaagggccttcaactagtcccttcgctattaacttataag 384  Q
    |||||||||| ||||||||||| | |||||| |||||||||| ||| || || |||||||| || || ||||||| ||||||||    
T  43042 tctaagctattttgaaaagaggggatttaagagaaggatttgaaaatggaccctcaactagcccttttgctattagcttataag 43125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 301 - 384
Target Start/End: Original strand, 18030 - 18113
Alignment:
Q  301 tctaagctatattgaaaagaggagttttaagggaaggatttgcaaaagggccttcaactagtcccttcgctattaacttataag 384  Q
    |||||||||| ||||||||||| |  ||||| |||||||||| ||| || || |||||||| || || ||||||| ||||||||    
T  18030 tctaagctattttgaaaagaggggacttaagagaaggatttgaaaatggaccctcaactagcccttttgctattagcttataag 18113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 301 - 384
Target Start/End: Original strand, 33120275 - 33120358
Alignment:
Q  301 tctaagctatattgaaaagaggagttttaagggaaggatttgcaaaagggccttcaactagtcccttcgctattaacttataag 384  Q
    |||||||||| ||||||||||| | |||||| |||||||||| ||| || || |||||||| || || ||||||| ||||||||    
T  33120275 tctaagctattttgaaaagaggggatttaagagaaggatttgaaaatggaccctcaactagcccttttgctattagcttataag 33120358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 301 - 384
Target Start/End: Original strand, 33130018 - 33130101
Alignment:
Q  301 tctaagctatattgaaaagaggagttttaagggaaggatttgcaaaagggccttcaactagtcccttcgctattaacttataag 384  Q
    |||||||||| ||||||||||| | |||||| |||||||||| ||| || || |||||||| || || ||||||| ||||||||    
T  33130018 tctaagctattttgaaaagaggggatttaagagaaggatttgaaaatggaccctcaactagcccttttgctattagcttataag 33130101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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