View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20177_low_25 (Length: 390)
Name: NF20177_low_25
Description: NF20177
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20177_low_25 |
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Alignment Details
Target: chr6 (Bit Score: 155; Significance: 3e-82; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 186 - 352
Target Start/End: Complemental strand, 14208069 - 14207903
Alignment:
| Q |
186 |
agataaactggtttggaattctgtgagtactcctatatctatactgcttattatagcgtgaaaactctcagcttcaggcttataggtatctaactcagcc |
285 |
Q |
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| T |
14208069 |
agataaactggtttggaattctgtgagtactcttatatctatactgcttattatagcgtgaaaactctcagcttcaggcttataggtatctaactcagcc |
14207970 |
T |
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| Q |
286 |
ttaggtatctactaaaaaatgctccaattgccatatggtgccctttgaggttaatgaaagcaattga |
352 |
Q |
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| T |
14207969 |
ttaggtatctactaaaaaatgctccaattgacatatggtgccctttgaggttaatgaaagtaattga |
14207903 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 14208256 - 14208150
Alignment:
| Q |
1 |
ccaacttccctggaatcgctctcttcgccctcctctgcacggagatgcaattcaaggacagatggattgtgtct---ccaagagttagttcaattcatca |
97 |
Q |
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| T |
14208256 |
ccaacttcactggaatcgctctcttcgccctcctctgcacggagatgcaattcaaggacagatggattgtgtctctcccaagagttagttcaattcatca |
14208157 |
T |
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| Q |
98 |
tcatcac |
104 |
Q |
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||||||| |
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| T |
14208156 |
tcatcac |
14208150 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 108; Significance: 4e-54; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 179 - 323
Target Start/End: Complemental strand, 2368651 - 2368503
Alignment:
| Q |
179 |
gcagaacagataaactggtttggaattctgtgagtactcctatatctatactgcttattatagcgtgaaaactctcagcttcaggcttatag----gtat |
274 |
Q |
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| T |
2368651 |
gcagaatagataaactggtttggaattctgtgagtactcttatatctatactatttattatagcgtgaaaactctcagcttcaggcttataattaagtat |
2368552 |
T |
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| Q |
275 |
ctaactcagccttaggtatctactaaaaaatgctccaattgccatatgg |
323 |
Q |
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| T |
2368551 |
ctaactcagccttaggtatctactaaaaaatgctccaattgacatatgg |
2368503 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 12 - 69
Target Start/End: Complemental strand, 2368856 - 2368799
Alignment:
| Q |
12 |
ggaatcgctctcttcgccctcctctgcacggagatgcaattcaaggacagatggattg |
69 |
Q |
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||||||||||||||||||||| | |||||||||||||||||||||| || |||||||| |
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| T |
2368856 |
ggaatcgctctcttcgccctcatttgcacggagatgcaattcaagggcaaatggattg |
2368799 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 61; Significance: 4e-26; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 204 - 321
Target Start/End: Complemental strand, 42302400 - 42302280
Alignment:
| Q |
204 |
ttctgtgagtactcctatatctatactgcttattatagcgtgaaaactctcagcttcaggcttatag----gtatctaactcagccttaggtatctacta |
299 |
Q |
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| T |
42302400 |
ttctgtgagtactcttacatctatactatttattatagcgtgaaaactcttagtttcaggcttataattaagtatctaactcagccttaggtatctact- |
42302302 |
T |
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| Q |
300 |
aaaaatgctccaattgccatat |
321 |
Q |
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||| |||||||||||| ||||| |
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| T |
42302301 |
aaagatgctccaattgacatat |
42302280 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 42302647 - 42302579
Alignment:
| Q |
1 |
ccaacttccctggaatcgctctcttcgccctcctctgcacggagatgcaattcaaggacagatggattg |
69 |
Q |
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|||||||| | ||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| |
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| T |
42302647 |
ccaacttcaccggaatcgctctcttcgccctcctctacacggagatgcaattcaaggacaaatggattg |
42302579 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 49; Significance: 6e-19; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 5 - 69
Target Start/End: Complemental strand, 1343455 - 1343391
Alignment:
| Q |
5 |
cttccctggaatcgctctcttcgccctcctctgcacggagatgcaattcaaggacagatggattg |
69 |
Q |
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|||| |||||||||||||||||||||||||| || ||||||||||||||||||||| |||||||| |
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| T |
1343455 |
cttcactggaatcgctctcttcgccctcctccgcgcggagatgcaattcaaggacaaatggattg |
1343391 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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