View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20177_low_26 (Length: 383)
Name: NF20177_low_26
Description: NF20177
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20177_low_26 |
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Alignment Details
Target: chr3 (Bit Score: 283; Significance: 1e-158; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 19 - 317
Target Start/End: Complemental strand, 47713654 - 47713356
Alignment:
| Q |
19 |
gaaactctcctccgacgacttcaattagcatggtcctataacccactcaccacccttaaactcgtctgtaacctccgcggcgtccgcggtaccggcaagt |
118 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
47713654 |
gaaactctcctccgacgacttcaattagcatggtcctataacccactcaccacccttaaactcgtctgtaacctccgcggcgttcgcggtaccggcaagt |
47713555 |
T |
|
| Q |
119 |
ccgatcgtgaaggtttctacgccgctgctctttggtttcaccactgccaccctaaaaccctagcttctaacgtccctccccttgctgaatttggttactt |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||| ||||||||||| |
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| T |
47713554 |
ccgatcgtgaaggtttctacgccgctgctctttggtttcaccactaccaccctaaaaccctagcttctaacgtcccttcccttgctgactttggttactt |
47713455 |
T |
|
| Q |
219 |
caaagatctcccagaaatcctttaccgtcttctgcaaggtaccaatatacgtaaaatccagaaagaagaatggaatcaaaagaaattagcagcctacag |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47713454 |
caaagatctcccagaaatcctttaccgtcttctgcaaggtaccaatatacgtaaaatccagaaagaagaatggaatcaaaagaaattagcagcctacag |
47713356 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 331 - 383
Target Start/End: Complemental strand, 47713324 - 47713272
Alignment:
| Q |
331 |
aaatcaaaaacccgttttggtgttagaaaattcgatcaagaacaatgggagtt |
383 |
Q |
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|||||||||||||| |||||||| ||||||||||||||||||||||||||||| |
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| T |
47713324 |
aaatcaaaaacccgctttggtgtaagaaaattcgatcaagaacaatgggagtt |
47713272 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 72; Significance: 1e-32; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 44 - 251
Target Start/End: Complemental strand, 15835815 - 15835608
Alignment:
| Q |
44 |
tagcatggtcctataacccactcaccacccttaaactcgtctgtaacctccgcggcgtccgcggtaccggcaagtccgatcgtgaaggtttctacgccgc |
143 |
Q |
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||||||||||| ||||||||||||||||||| |||||||||||||||||||| || || || ||||||||||||||| || ||||| |||||||| || |
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| T |
15835815 |
tagcatggtcccataacccactcaccaccctcaaactcgtctgtaacctccgtggtgttcgtggtaccggcaagtccaataaagaaggcttctacgctgc |
15835716 |
T |
|
| Q |
144 |
tgctctttggtttcaccactgccaccctaaaaccctagcttctaacgtccctccccttgctgaatttggttacttcaaagatctcccagaaatcctttac |
243 |
Q |
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|||||| ||||| || | |||||||||||||||||| | || || || | | |||| ||||||||||||||||||||||| || ||||| ||| |
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| T |
15835715 |
tgctctctggttgcatgaaaatcaccctaaaaccctagctaccaatgtttcttcattcgctgcctttggttacttcaaagatctccctgagatcctctac |
15835616 |
T |
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| Q |
244 |
cgtcttct |
251 |
Q |
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|||||||| |
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| T |
15835615 |
cgtcttct |
15835608 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 71; Significance: 5e-32; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 49 - 251
Target Start/End: Complemental strand, 19796572 - 19796370
Alignment:
| Q |
49 |
tggtcctataacccactcaccacccttaaactcgtctgtaacctccgcggcgtccgcggtaccggcaagtccgatcgtgaaggtttctacgccgctgctc |
148 |
Q |
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|||||| | ||||| |||||| |||| |||||||||||||||||||| ||||||||||||||||| |||||| | ||||| ||||||||||| |||| |
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| T |
19796572 |
tggtcccaaaaccctctcaccgccctcaaactcgtctgtaacctccgtggcgtccgcggtaccggaaagtccaacaaagaaggcttctacgccgccgctc |
19796473 |
T |
|
| Q |
149 |
tttggtttcaccactgccaccctaaaaccctagcttctaacgtccctccccttgctgaatttggttacttcaaagatctcccagaaatcctttaccgtct |
248 |
Q |
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| T |
19796472 |
tctggtttcatgaaaatcaccctaaaaccctagctaccaatgttccttctctcgctgactttggctacttcaaagatctccctgagatcctctaccgtct |
19796373 |
T |
|
| Q |
249 |
tct |
251 |
Q |
| |
|
||| |
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|
| T |
19796372 |
tct |
19796370 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 199 - 304
Target Start/End: Original strand, 19785180 - 19785285
Alignment:
| Q |
199 |
cttgctgaatttggttacttcaaagatctcccagaaatcctttaccgtcttctgcaaggtaccaatatacgtaaaatccagaaagaagaatggaatcaaa |
298 |
Q |
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|||||||| ||||||||||||||||||||||| ||||| || |||||| |||| |||||| | || ||| |||||||||||||||| |||||| ||| |
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| T |
19785180 |
cttgctgactttggttacttcaaagatctccctgaaattctataccgtattctccaaggttctggaattcgtgaaatccagaaagaagagtggaatgaaa |
19785279 |
T |
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| Q |
299 |
agaaat |
304 |
Q |
| |
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||||| |
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| T |
19785280 |
ggaaat |
19785285 |
T |
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