View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20177_low_27 (Length: 370)
Name: NF20177_low_27
Description: NF20177
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20177_low_27 |
 | |
|
| [»] scaffold0083 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 267; Significance: 1e-149; HSPs: 21)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 1 - 362
Target Start/End: Complemental strand, 10373983 - 10373619
Alignment:
| Q |
1 |
tgaatggattccctttgaaggcataaaatttgcttttcctcaacttaaggcaatagagttacgtgattgtccagaactaaggggacatttgcccaccaac |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
10373983 |
tgaatggattccctttgaaggcataaaatttgcttttcctcgacttaaggctatagagttacgtaattgtccagaactaaggggacatttgcccaccaac |
10373884 |
T |
|
| Q |
101 |
cttccttccatagaaaaaattgtaatatcaggttgttctcatctattggaaacaccatctactctgcattggttgtcttcaatnnnnnnnntgaatatct |
200 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
10373883 |
cttccttccatagaagaaattgtaatatcaggttgttctcatctattggaaacaccatctactctgcattggttgtcttcaataaaagaaatgaatatca |
10373784 |
T |
|
| Q |
201 |
atgggcttg---gtgaaagttcccaattgccattgcttgagagtgattctccgtgtatgatgcaagaagtagttatttgtgaaggtgttaagttattatt |
297 |
Q |
| |
|
||||||||| |||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| |
|
|
| T |
10373783 |
atgggcttgagagtgaaagttcccaactgtcattgcttgagagtgattctccgtgtatgatgcaagaagtagttattcgtgaatgtgttaagttattagc |
10373684 |
T |
|
| Q |
298 |
tgtaccaaaattgattctgagaagcacttgtcttacacacttgagactcgattctctttcatctc |
362 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||| |
|
|
| T |
10373683 |
tgttccaaaattgattctgagaagcacttgtcttacacacttggaactcgattctctttcttctc |
10373619 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 1 - 362
Target Start/End: Original strand, 9851670 - 9852031
Alignment:
| Q |
1 |
tgaatggattccctttgaaggcataaaatttgcttttcctcaacttaaggcaatagagttacgtgattgtccagaactaaggggacatttgcccaccaac |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| |
|
|
| T |
9851670 |
tgaatggattccctttgaaggcataaaatttgcttttcctcaacttaaggcaatagagttacgtgattgtccaaaactaaggggatatttgcccaccaac |
9851769 |
T |
|
| Q |
101 |
cttccttccatagaaaaaattgtaatatcaggttgttctcatctattggaaacaccatctactctgcattggttgtcttcaatnnnnnnnntgaatatct |
200 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||| |
|
|
| T |
9851770 |
cttccttccatagaagaaattgtaatatcaggttgttctcatctattggaaacaccatctactctgcgttggttgtcttcaataaaaaaaatgaatatca |
9851869 |
T |
|
| Q |
201 |
atgggcttggtgaaagttcccaattgccattgcttgagagtgattctccgtgtatgatgcaagaagtagttatttgtgaag-gtgttaagttattatttg |
299 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||| | ||| ||| |||||||| ||||| || |
|
|
| T |
9851870 |
atgggcttggtgaaagttcccaattgtcattgcttgagagtgattctccgtgtatgatgcaagatgtagaga-ttgaaaagtgtgttaagctattagctg |
9851968 |
T |
|
| Q |
300 |
taccaaaattgattctgagaagcacttgtcttacacacttgagactcgattctctttcatctc |
362 |
Q |
| |
|
| |||||||||||| ||||||||||||||||||||||||||||||||||||| ||||| |||| |
|
|
| T |
9851969 |
tgccaaaattgattatgagaagcacttgtcttacacacttgagactcgattcactttcttctc |
9852031 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 1 - 362
Target Start/End: Original strand, 9840792 - 9841150
Alignment:
| Q |
1 |
tgaatggattccctttgaaggcataaaatttgcttttcctcaacttaaggcaatagagttacgtgattgtccagaactaaggggacatttgcccaccaac |
100 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||| |||||||||||||||||||| |||||||||||||| |
|
|
| T |
9840792 |
tgaatggattccctttgaaggcataaa---tgcttttcctcaacttaaggctatagagttacgcaattgtccagaactaaggggatatttgcccaccaac |
9840888 |
T |
|
| Q |
101 |
cttccttccatagaaaaaattgtaatatcaggttgttctcatctattggaaacaccatctactctgcattggttgtcttcaatnnnnnnnntgaatatct |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
9840889 |
cttccttccatagaaaaaattgtaatatcaggttgttctcatctattggaaacaccatctactctgcattggttgtcttcaataaaaaaaatgaatatca |
9840988 |
T |
|
| Q |
201 |
atgggcttggtgaaagttcccaattgccattgcttgagagtgattctccgtgtatgatgcaagaagtagttatttgtgaag-gtgttaagttattatttg |
299 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||| ||||| | ||| ||| ||||||| ||||| ||| |
|
|
| T |
9840989 |
atgggcttggtgaaagttcccaattgtcattgcttgagagtgattctccatgtatgatgcaagatgtagtga-ttgaaaagtgtgttaaactattagttg |
9841087 |
T |
|
| Q |
300 |
taccaaaattgattctgagaagcacttgtcttacacacttgagactcgattctctttcatctc |
362 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
9841088 |
ttccaaaattgattctgagaagcacttgtcttacacacttgagactcgattctctttcttctc |
9841150 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 1 - 362
Target Start/End: Original strand, 10128856 - 10129217
Alignment:
| Q |
1 |
tgaatggattccctttgaaggcataaaatttgcttttcctcaacttaaggcaatagagttacgtgattgtccagaactaaggggacatttgcccaccaac |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| | ||||||||||||||||||||||||||||||||||| |
|
|
| T |
10128856 |
tgaatggattccctttgaaggcataaaatttgcttttcctcaacttaaggctatagagttatggaattgtccagaactaaggggacatttgcccaccaac |
10128955 |
T |
|
| Q |
101 |
cttccttccatagaaaaaattgtaatatcaggttgttctcatctattggaaacaccatctactctgcattggttgtcttcaatnnnnnnnntgaatatct |
200 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
10128956 |
cttccttccatagaagaaattgtaatatcaggttgttctcatctattggaaacaccatctactctgcattggttgtcttcaataaaaaaaatgaatatca |
10129055 |
T |
|
| Q |
201 |
atgggcttggtgaaagttcccaattgccattgcttgagagtgattctccgtgtatgatgcaagaagtagttatttgtgaaggtgttaagttattatttgt |
300 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| | |||| ||| | || |||| ||||| ||| |
|
|
| T |
10129056 |
atgggcttggtgaaagttcccaattgtcattgcttgagagtgattctccgtgtatgatgcaacatgtagcgattcacaactgttctaagctattagctgt |
10129155 |
T |
|
| Q |
301 |
accaaaattgattctgagaagcacttgtcttacacacttgagactcgattctctttcatctc |
362 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||| |||||||||| |||| |
|
|
| T |
10129156 |
gccaaaattgattctgaaaagcacttgtcttacacacttgagactctattctctttcttctc |
10129217 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 362
Target Start/End: Original strand, 10519416 - 10519777
Alignment:
| Q |
1 |
tgaatggattccctttgaaggcataaaatttgcttttcctcaacttaaggcaatagagttacgtgattgtccagaactaaggggacatttgcccaccaac |
100 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||| ||| |||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
10519416 |
tgaatggattcccttcgaaggcataaaatttgcttttcctcaacttaaggctataaagttacgtaattgtccagaactaaggggacatttgcccaccaac |
10519515 |
T |
|
| Q |
101 |
cttccttccatagaaaaaattgtaatatcaggttgttctcatctattggaaacaccatctactctgcattggttgtcttcaatnnnnnnnntgaatatct |
200 |
Q |
| |
|
||||||||||||||| ||||||||||| ||||||| ||||||||||||||||||||||||| ||||||||||||||||||| |||||||| |
|
|
| T |
10519516 |
cttccttccatagaagaaattgtaataaaaggttgtgttcatctattggaaacaccatctactttgcattggttgtcttcaataaaaaaaatgaatatca |
10519615 |
T |
|
| Q |
201 |
atgggcttggtgaaagttcccaattgccattgcttgagagtgattctccgtgtatgatgcaagaagtagttatttgtgaaggtgttaagttattatttgt |
300 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||| |||| ||| | |||||||| ||||| ||| |
|
|
| T |
10519616 |
atgggcttggtgaaagttcccaattgtcattgcttgagagtgattctccttgtatgatgcaagatgtagagattaaaaagtgtgttaagctattagctgt |
10519715 |
T |
|
| Q |
301 |
accaaaattgattctgagaagcacttgtcttacacacttgagactcgattctctttcatctc |
362 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||| |||||||||||||||| |||| |
|
|
| T |
10519716 |
gccaaaattgattctgaaaagcacttgtcttacacacttgggactcgattctctttcttctc |
10519777 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 362
Target Start/End: Original strand, 10033931 - 10034295
Alignment:
| Q |
1 |
tgaatggattccctttgaaggcataaaatttgcttttcctcaacttaaggcaatagagttacgtgattgtccagaactaaggggacatttgcccaccaac |
100 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||| ||||||||| ||||||||| | ||||||||||||||||||||||||||||||||||| |
|
|
| T |
10033931 |
tgaatggattccctttgaaggcataaaatgtgcttttcctcgacttaaggctatagagttatataattgtccagaactaaggggacatttgcccaccaac |
10034030 |
T |
|
| Q |
101 |
cttccttccatagaaaaaattgtaatatcaggttgttctcatctattggaaacaccatctactctgcattggttgtcttcaatnnnnnnnntgaatatct |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
10034031 |
cttccttccatagaaaaaattgtaatatcaggttgttctcatctattggaaacaccatctactctgcattggttgtcttcaataaaaaaaatgaatatca |
10034130 |
T |
|
| Q |
201 |
atgggcttg---gtgaaagttcccaattgccattgcttgagagtgattctccgtgtatgatgcaagaagtagttatttgtgaaggtgttaagttattatt |
297 |
Q |
| |
|
||||||||| |||||||||||||| || ||||||||||||||||||||||||||||||||||| | |||| ||| | || |||| ||||| |
|
|
| T |
10034131 |
atgggcttgagagtgaaagttcccaactgtcattgcttgagagtgattctccgtgtatgatgcaacatgtagcgattcacaactgttctaagctattagc |
10034230 |
T |
|
| Q |
298 |
tgtaccaaaattgattctgagaagcacttgtcttacacacttgagactcgattctctttcatctc |
362 |
Q |
| |
|
||| |||||||||||| |||||||||||||||||||||||||| |||| |||||||||| |||| |
|
|
| T |
10034231 |
tgtgccaaaattgattttgagaagcacttgtcttacacacttggaactcaattctctttcttctc |
10034295 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 156; E-Value: 8e-83
Query Start/End: Original strand, 1 - 355
Target Start/End: Original strand, 10262629 - 10262986
Alignment:
| Q |
1 |
tgaatggattccctttgaaggcataaaatttgcttttcctcaacttaaggcaatagagttacgtgattgtccagaactaaggggacatttgcccaccaac |
100 |
Q |
| |
|
||||||| |||||| ||||||||||||| || ||||||||| ||||| || || ||||||| | |||||||||||||||||| ||||||||| | ||| |
|
|
| T |
10262629 |
tgaatggcttccctatgaaggcataaaactttcttttcctcgacttagagctatggagttacataattgtccagaactaagggaacatttgcctagcaaa |
10262728 |
T |
|
| Q |
101 |
cttccttccatagaaaaaattgtaatatcaggttgttctcatctattggaaaca---ccatctactctgcattggttgtcttcaatnnnnnnnntgaata |
197 |
Q |
| |
|
||||||| ||||||| ||||||||||| ||||||||||||||||||||||||| ||| ||| ||||||||||||| ||| | | |||| |
|
|
| T |
10262729 |
cttccttgcatagaagaaattgtaataaaaggttgttctcatctattggaaacagagccaaacactttgcattggttgtcgtcagtaaagaaaattaata |
10262828 |
T |
|
| Q |
198 |
tctatgggcttggtgaaagttcccaattgccattgcttgagagtgattctccgtgtatgatgcaagaagtagttatttgtgaaggtgttaagttattatt |
297 |
Q |
| |
|
|| ||||||||| || ||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| |
|
|
| T |
10262829 |
tcgatgggcttgatggaaggacccaattgtcattgcttgagagtgattctccgtgtatgatgcaagaagtagttattcgtgaatgtgttaagttattagc |
10262928 |
T |
|
| Q |
298 |
tgtaccaaaattgattctgagaagcacttgtcttacacacttgagactcgattctctt |
355 |
Q |
| |
|
||| ||||||||||||||||||||||||||||| |||||||||| |||| ||||||| |
|
|
| T |
10262929 |
tgttccaaaattgattctgagaagcacttgtctaacacacttgaaactcagttctctt |
10262986 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 131; E-Value: 7e-68
Query Start/End: Original strand, 1 - 362
Target Start/End: Complemental strand, 10432182 - 10431818
Alignment:
| Q |
1 |
tgaatggattccctttgaaggcataaaatttgcttttcctcaacttaaggcaatagagttacgtgattgtccagaactaaggggacatttgcccaccaac |
100 |
Q |
| |
|
||||||| | |||||||||||||||||| |||||||||||| ||||| | || ||||||| | ||||||| |||||||||||||| ||||| | |||| |
|
|
| T |
10432182 |
tgaatggctgccctttgaaggcataaaagttgcttttcctcgacttagagttatggagttacataattgtcctgaactaaggggacaattgcctagcaac |
10432083 |
T |
|
| Q |
101 |
cttccttccatagaaaaaattgtaatatcaggttgttctcatctattggaaaca---ccatctactctgcattggttgtcttcaatnnnnnnnntgaata |
197 |
Q |
| |
|
||||||| ||||||| |||||| ||||||||||||||||| ||| |||||||| ||| ||| ||||||||||||| ||||| | |||| |
|
|
| T |
10432082 |
cttccttgcatagaagaaattgatatatcaggttgttctcaactactggaaacagagccaaacactatgcattggttgtcgtcaataaagaaagttaata |
10431983 |
T |
|
| Q |
198 |
tctatgggcttggtgaaagttcccaattgccattgcttgagagtgattctccgtgtatgatgcaagaagtagttatttgtgaaggtgttaagttattatt |
297 |
Q |
| |
|
|| ||||||||| | ||| || | ||| ||||||||||||||||||||||||||||||||||| | ||||| ||| | |||||||| ||||| | |
|
|
| T |
10431982 |
tcaatgggcttgacggaaggaccaatttgtcattgcttgagagtgattctccgtgtatgatgcaacatgtagtgattgaaaactgtgttaagctattagt |
10431883 |
T |
|
| Q |
298 |
tgtaccaaaattgattctgagaagcacttgtcttacacacttgagactcgattctctttcatctc |
362 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
10431882 |
tgtgccaaaattgattctgagaagcacttgtcttacacacttgagactcgattctctttcttctc |
10431818 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 1 - 361
Target Start/End: Original strand, 10197604 - 10197967
Alignment:
| Q |
1 |
tgaatggattccctttgaaggcataaaatttgcttttcctcaacttaaggcaatagagttacgtgattgtccagaactaaggggacatttgcccaccaac |
100 |
Q |
| |
|
||||||| |||||| |||||||||||||||||||||||||| ||||| || || ||||||||| |||||| ||||||||||||||||||||| | |||| |
|
|
| T |
10197604 |
tgaatggcttccctatgaaggcataaaatttgcttttcctcgacttagagctatggagttacgtaattgtcgagaactaaggggacatttgcctagcaac |
10197703 |
T |
|
| Q |
101 |
cttccttccatagaaaaaattgtaatatcaggttgttctcatctattggaaaca---ccatctactctgcattggttgtcttcaatnnnnnnnntgaata |
197 |
Q |
| |
|
||||||| |||| || ||||||||||| ||||||||||||||||||||||||| ||| ||| ||||||||||||| ||| | | |||| |
|
|
| T |
10197704 |
cttccttgcataaaagaaattgtaataaaaggttgttctcatctattggaaacagagccaaacactttgcattggttgtcgtcagtaaagaaaattaata |
10197803 |
T |
|
| Q |
198 |
tctatgggcttggtgaaagttcccaattgccattgcttgagagtgattctccgtgtatgatgcaagaagtagttatttgtgaaggtgttaagttattatt |
297 |
Q |
| |
|
|| ||||| |||||||||| |||||||| |||||||||||||||||||||||||||||||| |||| ||||| ||| | | ||| |||| ||||| |
|
|
| T |
10197804 |
tcgatgggtttggtgaaaggacccaattgtcattgcttgagagtgattctccgtgtatgatggaagatgtagtgattcgaaagtgtgctaagctattagc |
10197903 |
T |
|
| Q |
298 |
tgtaccaaaattgattctgagaagcacttgtcttacacacttgagactcgattctctttcatct |
361 |
Q |
| |
|
| | |||||| |||||| ||||||||||||||| |||||||| |||| |||||||||||||| |
|
|
| T |
10197904 |
tatgccaaaaatgattccaagaagcacttgtcttcaacacttgaaactctattctctttcatct |
10197967 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 1 - 362
Target Start/End: Complemental strand, 11780120 - 11779759
Alignment:
| Q |
1 |
tgaatggattccctttgaaggcataaaatttgcttttcctcaacttaaggcaatagagttacgtgattgtccagaactaaggggacatttgcccaccaac |
100 |
Q |
| |
|
||||||| ||||||||||||| ||||||||||| ||||||| ||| || | || ||||| ||| ||||||| |||||||||||||||||||| |||||| |
|
|
| T |
11780120 |
tgaatggtttccctttgaaggtataaaatttgcatttcctcgactcaaaactatggagttgcgtaattgtcctgaactaaggggacatttgcctaccaac |
11780021 |
T |
|
| Q |
101 |
cttccttccatagaaaaaattgtaatatcaggttgttctcatctattggaaacaccatctactctgcattggttgtcttcaatnnnnnnnntgaatatct |
200 |
Q |
| |
|
||||||| ||| ||| ||||||||||| ||||||||||||||||||||||| |||||||||| ||||||||||||| ||||| |||||||| |
|
|
| T |
11780020 |
cttccttgcatcgaagaaattgtaataaaaggttgttctcatctattggaaaaaccatctactttgcattggttgtcgtcaataaaagaaatgaatatca |
11779921 |
T |
|
| Q |
201 |
atgggcttggtgaaagttcccaattgccattgcttgagagtgattctccgtgtatgatgcaagaagtagttatttgtgaag-gtgttaagttattatttg |
299 |
Q |
| |
|
| || |||||||||| | |||||| |||||||||| |||||||||| | |||||||||| | ||||| | ||| ||| ||| | || ||| | ||| |
|
|
| T |
11779920 |
aaggacttggtgaaaagacacaattgtcattgcttgatagtgattctctatctatgatgcaacatgtagtga-ttgaaaagtgtgctgagctatcagttg |
11779822 |
T |
|
| Q |
300 |
taccaaaattgattctgagaagcacttgtcttacacacttgagactcgattctctttcatctc |
362 |
Q |
| |
|
| |||||||||||| ||||||||| |||||||||| ||||||||||| |||||||||| |||| |
|
|
| T |
11779821 |
tgccaaaattgattttgagaagcatttgtcttacatacttgagactccattctctttcttctc |
11779759 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 1 - 361
Target Start/End: Original strand, 10090721 - 10091085
Alignment:
| Q |
1 |
tgaatggattccctttgaaggcataaaatttgcttttcctcaacttaaggcaatagagtt-acgtgattgtccagaactaaggggacatttgcccaccaa |
99 |
Q |
| |
|
||||||| |||||| |||||||||||||||||||||||||| ||||| || || |||| |||| |||||| ||||||||||||||||||||| | ||| |
|
|
| T |
10090721 |
tgaatggcttccctatgaaggcataaaatttgcttttcctcgacttagagctatggagtacacgtaattgtcgagaactaaggggacatttgcctagcaa |
10090820 |
T |
|
| Q |
100 |
ccttccttccatagaaaaaattgtaatatcaggttgttctcatctattggaaaca---ccatctactctgcattggttgtcttcaatnnnnnnnntgaat |
196 |
Q |
| |
|
|||||||| |||| || ||||||||||| ||||||||||||||||||||||||| ||| ||| ||||||||||||| ||| | | ||| |
|
|
| T |
10090821 |
ccttccttgcataaaagaaattgtaataaaaggttgttctcatctattggaaacagagccaaacactttgcattggttgtcgtcagtaaagaaaattaat |
10090920 |
T |
|
| Q |
197 |
atctatgggcttggtgaaagttcccaattgccattgcttgagagtgattctccgtgtatgatgcaagaagtagttatttgtgaaggtgttaagttattat |
296 |
Q |
| |
|
||| ||||| |||||||||| |||||||| |||||||||||||||||||||| ||||||||| |||| ||||| ||| | | ||| |||| ||||| |
|
|
| T |
10090921 |
atcgatgggtttggtgaaaggacccaattgtcattgcttgagagtgattctccatgtatgatggaagatgtagtgattcgaaagtgtgctaagctattag |
10091020 |
T |
|
| Q |
297 |
ttgtaccaaaattgattctgagaagcacttgtcttacacacttgagactcgattctctttcatct |
361 |
Q |
| |
|
| | |||||| |||||| ||||||||||||||| |||||||| |||| |||||||||||||| |
|
|
| T |
10091021 |
ctatgccaaaaatgattccaagaagcacttgtcttcaacacttgaaactctattctctttcatct |
10091085 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 1 - 362
Target Start/End: Original strand, 11771165 - 11771526
Alignment:
| Q |
1 |
tgaatggattccctttgaaggcataaaatttgcttttcctcaacttaaggcaatagagttacgtgattgtccagaactaaggggacatttgcccaccaac |
100 |
Q |
| |
|
||||||| |||| |||||||| ||||||||||||||||||| ||| || | || ||||| ||| ||||||| |||||||||| |||||| || |||||| |
|
|
| T |
11771165 |
tgaatggcttccttttgaaggtataaaatttgcttttcctcgactcaaaactatggagttgcgtaattgtcctgaactaagggtacattttcctaccaac |
11771264 |
T |
|
| Q |
101 |
cttccttccatagaaaaaattgtaatatcaggttgttctcatctattggaaacaccatctactctgcattggttgtcttcaatnnnnnnnntgaatatct |
200 |
Q |
| |
|
||||||| ||| ||| |||||||||| ||||||||||||||||||||||| |||||||||| ||||||||||||| ||||| |||||||| |
|
|
| T |
11771265 |
cttccttgcatcgaagaaattgtaatcaaaggttgttctcatctattggaaaaaccatctactttgcattggttgtcgtcaataaaagaaatgaatatca |
11771364 |
T |
|
| Q |
201 |
atgggcttggtgaaagttcccaattgccattgcttgagagtgattctccgtgtatgatgcaagaagtagttatttgtgaag-gtgttaagttattatttg |
299 |
Q |
| |
|
| || |||||||||| | || ||| |||||||||| |||||||||| | |||||||||| | ||||| | ||| ||| |||| || ||| | ||| |
|
|
| T |
11771365 |
acggccttggtgaaaagacacagttgtcattgcttgatagtgattctctatctatgatgcaacatgtagtga-ttgaaaagtatgttgagctatcagttg |
11771463 |
T |
|
| Q |
300 |
taccaaaattgattctgagaagcacttgtcttacacacttgagactcgattctctttcatctc |
362 |
Q |
| |
|
| |||||||||||| |||||||||||||||||||| ||||||||||| |||||||||| |||| |
|
|
| T |
11771464 |
tgccaaaattgattttgagaagcacttgtcttacatacttgagactccattctctttcttctc |
11771526 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 1 - 347
Target Start/End: Complemental strand, 10361939 - 10361593
Alignment:
| Q |
1 |
tgaatggattccctttgaaggcataaaatttgcttttcctcaacttaaggcaatagagttacgtgattgtccagaactaaggggacatttgcccaccaac |
100 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||| || || ||||||| | |||||||||||||||||||||||||||| | |||| |
|
|
| T |
10361939 |
tgaatggattccctttgaaggcataaaatgtgcttttcctcaacttagagctatggagttacataattgtccagaactaaggggacatttgccgagcaac |
10361840 |
T |
|
| Q |
101 |
cttccttccatagaaaaaattgtaatatcaggttgttctcatctattggaaacaccatctactctgcattggttgtcttcaatnnnnnnnntgaatatct |
200 |
Q |
| |
|
||||||| ||||||| ||||||||||| ||||||||||||||||||||||||| | ||| ||||||||||||| ||||| | || || |
|
|
| T |
10361839 |
cttccttgcatagaagaaattgtaatacaaggttgttctcatctattggaaacagagcccactttgcattggttgtcgtcaataaaaaattttaagattg |
10361740 |
T |
|
| Q |
201 |
atgggcttggtgaaagttcccaattgccattgcttgagagtgattctccgtgtatgatgcaagaagtagttatttgtgaaggtgttaagttattatttgt |
300 |
Q |
| |
|
||||||||| || ||| |||||||| |||| |||| ||| |||||||| |||||||||||| | | ||| ||| | | | || | | | || ||| |
|
|
| T |
10361739 |
atgggcttgatggaaggacccaattgtcatttcttgggagcgattctccatgtatgatgcaacatgcagtgattcaaaagtgcgctatgctgtcatctgt |
10361640 |
T |
|
| Q |
301 |
accaaaattgattctgagaagcacttgtcttacacacttgagactcg |
347 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||| |||||| |
|
|
| T |
10361639 |
gccaaaattgattctgagaagcacttgtcttacactcttgggactcg |
10361593 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 3 - 362
Target Start/End: Original strand, 10582543 - 10582903
Alignment:
| Q |
3 |
aatggattccctttgaaggcataaaatttgcttttcctcaacttaaggcaatagagttacgtgattgtccagaactaaggggacatttgcccaccaacct |
102 |
Q |
| |
|
||||| ||||||||||||||||| |||||||||||||||||||| || || |||||||| ||||||| |||||| |||||||||||| | | | || |
|
|
| T |
10582543 |
aatggcttccctttgaaggcatacaatttgcttttcctcaacttcgagctatgaagttacgtaattgtcccaaactaaagggacatttgcctagccatct |
10582642 |
T |
|
| Q |
103 |
tccttccatagaaaaaattgtaatatcaggttgttctcatctattggaaacaccatctactctgcattggttgtcttcaat-nnnnnnnntgaatatcta |
201 |
Q |
| |
|
||||| ||||||| |||||| |||| ||||||| |||||||||||||||| | ||| ||||||||||||| ||||| | || || | |
|
|
| T |
10582643 |
tccttgcatagaagaaattgaaatagaaggttgtgttcatctattggaaacagagcccactttgcattggttgtcgtcaataaaaaaaaattaagattga |
10582742 |
T |
|
| Q |
202 |
tgggcttggtgaaagttcccaattgccattgcttgagagtgattctccgtgtatgatgcaagaagtagttatttgtgaaggtgttaagttattatttgta |
301 |
Q |
| |
|
||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||| | ||| || | | ||||| ||||| ||| |
|
|
| T |
10582743 |
tgggcttggtgaaaggacccaattgttattgcttgagagtgattctccgtgtatgatgcaagatgcagtgatggcaaactgcgttaacctattagctgtg |
10582842 |
T |
|
| Q |
302 |
ccaaaattgattctgagaagcacttgtcttacacacttgagactcgattctctttcatctc |
362 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||| |
|
|
| T |
10582843 |
ccaaaattgattctgagaagcacttgtcttacacacttgagactctattctctttcttctc |
10582903 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #15
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 10665457 - 10665578
Alignment:
| Q |
1 |
tgaatggattccctttgaaggcataaaatttgcttttcctcaacttaaggcaatagagttacgtgattgtccagaactaaggggacatttgcccaccaac |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||| || || ||||||||| |||||||| |||||| |||||||||||| | | | |
|
|
| T |
10665457 |
tgaatggattccctttgaaggcataaaatttgcttttcctcgacttagagccatggagttacgtaattgtccaaaactaaagggacatttgcctagccat |
10665556 |
T |
|
| Q |
101 |
cttccttccatagaaaaaattg |
122 |
Q |
| |
|
||||||| |||||| |||||| |
|
|
| T |
10665557 |
cttccttgtatagaagaaattg |
10665578 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #16
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 99 - 340
Target Start/End: Original strand, 10502612 - 10502852
Alignment:
| Q |
99 |
accttccttccatagaaaaaattgtaatatcaggttgttctcatctattggaaacaccatctactctgcattggttgtcttcaatnnnnnnnntgaatat |
198 |
Q |
| |
|
||||| ||| ||||||| ||||||||||| ||||||| ||||||||||||||||||| ||||| |||||||| |||| ||| | ||||| |
|
|
| T |
10502612 |
acctttctttcatagaagaaattgtaatagaaggttgtgctcatctattggaaacaccgcctactttgcattggctgtcgtcattgaaaaaaggtaatat |
10502711 |
T |
|
| Q |
199 |
ctatgggcttggtgaaagttcccaattgccattgcttgagagtgattctccgtgtatgatgcaagaagtagttatttgtgaaggtgttaagttattattt |
298 |
Q |
| |
|
| ||||||||||||||| | ||||| ||||||||| |||||| ||||| |||||||||||| | ||||| |||||| |||||| | |||||| | |
|
|
| T |
10502712 |
caatgggcttggtgaaaagactcaattatcattgcttgggagtgactctccatgtatgatgcaacatgtagtcatttgtaggtgtgttacgctattatct |
10502811 |
T |
|
| Q |
299 |
gtaccaaaattgattctgagaagcacttgtcttacacacttg |
340 |
Q |
| |
|
| |||||| ||||| ||||||||||||||||| ||||||| |
|
|
| T |
10502812 |
attccaaaaatgatt-tgagaagcacttgtcttcaacacttg |
10502852 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #17
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 3 - 175
Target Start/End: Original strand, 10079343 - 10079515
Alignment:
| Q |
3 |
aatggattccctttgaaggcataaaatttgcttttcctcaacttaaggcaatagagttacgtgattgtccagaactaaggggacatttgcccaccaacct |
102 |
Q |
| |
|
||||| ||||||||||||| ||||| |||| |||||||| ||||| | || |||||| ||||||||| ||||||| ||| ||||| || | | |||| |
|
|
| T |
10079343 |
aatggcttccctttgaaggaataaattttgtttttcctcgacttagaactatggagttagatgattgtcctgaactaaaggggcattttcctagcgacct |
10079442 |
T |
|
| Q |
103 |
tccttccatagaaaaaattgtaatatcaggttgttctcatctattggaaacaccatctactctgcattggttg |
175 |
Q |
| |
|
||||| ||||||| ||||| | ||| ||||||| | ||||||||||||||||| ||||| || |||||||| |
|
|
| T |
10079443 |
tccttgcatagaagaaattatgataaaaggttgtgcgaatctattggaaacaccacctactttggattggttg |
10079515 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #18
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 3 - 175
Target Start/End: Original strand, 10186313 - 10186485
Alignment:
| Q |
3 |
aatggattccctttgaaggcataaaatttgcttttcctcaacttaaggcaatagagttacgtgattgtccagaactaaggggacatttgcccaccaacct |
102 |
Q |
| |
|
||||| ||||||||||||| ||||| |||| |||||||| ||||| | || |||||| ||||||||| ||||||| ||| |||||||| | |||| |
|
|
| T |
10186313 |
aatggcttccctttgaaggaataaattttgtttttcctcgacttagaactatggagttagatgattgtcctgaactaaaggggcatttgcctagtgacct |
10186412 |
T |
|
| Q |
103 |
tccttccatagaaaaaattgtaatatcaggttgttctcatctattggaaacaccatctactctgcattggttg |
175 |
Q |
| |
|
||||| ||||||| ||||| | ||| ||||||| | |||||||||| |||||| ||||| || |||||||| |
|
|
| T |
10186413 |
tccttgcatagaagaaattatgataaaaggttgtgcgaatctattggatacaccacctactttggattggttg |
10186485 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #19
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 302 - 362
Target Start/End: Original strand, 10665698 - 10665758
Alignment:
| Q |
302 |
ccaaaattgattctgagaagcacttgtcttacacacttgagactcgattctctttcatctc |
362 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||| |||| |||| ||||| |||| |
|
|
| T |
10665698 |
ccaaaattgattatgagaagcacttgtcttacacacttggcactctattcactttcttctc |
10665758 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 66 - 172
Target Start/End: Original strand, 10530643 - 10530749
Alignment:
| Q |
66 |
attgtccagaactaaggggacatttgcccaccaaccttccttccatagaaaaaattgtaatatcaggttgttctcatctattggaaacaccatctactct |
165 |
Q |
| |
|
||||||||||| | ||||||||||| || | | |||| ||||||||||| ||||| |||| ||||||| ||| |||||||||||||||| |||| | |
|
|
| T |
10530643 |
attgtccagaatttaggggacattttcctagccacctatcttccatagaagaaattcaaatagaaggttgtgctcgtctattggaaacaccacatacttt |
10530742 |
T |
|
| Q |
166 |
gcattgg |
172 |
Q |
| |
|
||||||| |
|
|
| T |
10530743 |
gcattgg |
10530749 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #21
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 66 - 157
Target Start/End: Original strand, 10679434 - 10679525
Alignment:
| Q |
66 |
attgtccagaactaaggggacatttgcccaccaaccttccttccatagaaaaaattgtaatatcaggttgttctcatctattggaaacacca |
157 |
Q |
| |
|
||||||||||||| ||| ||||||| |||| | |||| ||||||||||| ||||| |||| ||||| | ||| |||||||||||||||| |
|
|
| T |
10679434 |
attgtccagaacttaggcgacattttcccagccacctatcttccatagaagaaattcaaatagaaggttatgctcgtctattggaaacacca |
10679525 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0083 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: scaffold0083
Description:
Target: scaffold0083; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 1 - 362
Target Start/End: Complemental strand, 55740 - 55379
Alignment:
| Q |
1 |
tgaatggattccctttgaaggcataaaatttgcttttcctcaacttaaggcaatagagttacgtgattgtccagaactaaggggacatttgcccaccaac |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55740 |
tgaatggattccctttgaaggcataaaatttgcttttcctcaacttaaggcaatagagttacgtgattgtccagaactaaggggacatttgcccaccaac |
55641 |
T |
|
| Q |
101 |
cttccttccatagaaaaaattgtaatatcaggttgttctcatctattggaaacaccatctactctgcattggttgtcttcaatnnnnnnnntgaatatct |
200 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
55640 |
cttccttccatagaagaaattgtaatatcaggttgttctcatctattggaaacaccatctactctgcattggttgtcttcaataaaaataatgaatatca |
55541 |
T |
|
| Q |
201 |
atgggcttggtgaaagttcccaattgccattgcttgagagtgattctccgtgtatgatgcaagaagtagttatttgtgaaggtgttaagttattatttgt |
300 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| | |||| ||| | || |||| ||||| ||| |
|
|
| T |
55540 |
atgggcttggtgaaagttcccaattgtcattgcttgagagtgattctccgtgtatgatgcaacatgtagcgattcacaactgttctaagctattagctgt |
55441 |
T |
|
| Q |
301 |
accaaaattgattctgagaagcacttgtcttacacacttgagactcgattctctttcatctc |
362 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||| |||| |||| ||||| |||| |
|
|
| T |
55440 |
gccaaaattgattctgaaaagcacttgtcttacacacttgaaactccattcactttcttctc |
55379 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 87; Significance: 1e-41; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 3 - 361
Target Start/End: Original strand, 26908821 - 26909179
Alignment:
| Q |
3 |
aatggattccctttgaaggcataaaatttgcttttcctcaacttaaggcaatagagttacgtgattgtccagaactaaggggacatttgcccaccaacct |
102 |
Q |
| |
|
||||| ||||||||||||| || || ||| ||||||||| ||| | | || ||||| | | |||||||| |||||| |||| |||||| | |||||| |
|
|
| T |
26908821 |
aatggcttccctttgaaggaatgaatttttcttttcctcgactcagaactattgagttgcataattgtccaaaactaaaaggacttttgcctagcaacct |
26908920 |
T |
|
| Q |
103 |
tccttccatagaaaaaattgtaatatcaggttgttctcatctattggaaacaccatctactctgcattggttgtcttcaatnnnnnnnntgaatatctat |
202 |
Q |
| |
|
||||| ||||||| ||||||||||| |||||| | ||||||||||||||||||||||||| | |||||| |||| || || | |||||| || |
|
|
| T |
26908921 |
tccttgcatagaagaaattgtaataaaaggttgctatcatctattggaaacaccatctactttacattgggtgtcgtccataccgaaaattaatatccat |
26909020 |
T |
|
| Q |
203 |
gggcttggtgaaagttcccaattgccattgcttgagagtgattctccgtgtatgatgcaagaagtagttatttgtgaaggtgttaagttattatttgtac |
302 |
Q |
| |
|
||||||||| |||| || |||| |||||||| ||||||||||||| |||||||||||||| ||||| ||| | ||||| | ||||| | | | |
|
|
| T |
26909021 |
gggcttggtaaaaggaccatattgtcattgcttaagagtgattctccctgtatgatgcaagatgtagtgattcaaaattgtgttgggctattaggtttgc |
26909120 |
T |
|
| Q |
303 |
caaaattgattctgagaagcacttgtcttacacacttgagactcgattctctttcatct |
361 |
Q |
| |
|
|||||||||||||||||||||| |||||| |||||||| |||| |||||||||||||| |
|
|
| T |
26909121 |
caaaattgattctgagaagcacatgtcttcaacacttgaaactctattctctttcatct |
26909179 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 77 - 183
Target Start/End: Original strand, 11487042 - 11487148
Alignment:
| Q |
77 |
ctaaggggacatttgcccaccaaccttccttccatagaaaaaattgtaatatcaggttgttctcatctattggaaacaccatctactctgcattggttgt |
176 |
Q |
| |
|
||||||||||||||||| | | ||||||||| ||||||||||||| ||| |||||||| | ||||| ||||||||||||||| || |||||||||||| |
|
|
| T |
11487042 |
ctaaggggacatttgcctagccaccttccttgcatagaaaaaattaatataacaggttgtgcccatcttttggaaacaccatctgctttgcattggttgt |
11487141 |
T |
|
| Q |
177 |
cttcaat |
183 |
Q |
| |
|
| ||||| |
|
|
| T |
11487142 |
cgtcaat |
11487148 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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