View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20177_low_29 (Length: 355)
Name: NF20177_low_29
Description: NF20177
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20177_low_29 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 344; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 8 - 355
Target Start/End: Complemental strand, 7665531 - 7665184
Alignment:
| Q |
8 |
agcaatgttttacttggaccagattatgaaccattactcatagattatggtttcatccatctagttaacccttcaagttttacaaatacattacttgctt |
107 |
Q |
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| T |
7665531 |
agcaatgttttacttggaccagattatgaaccattactcatagattatggtttcatccatctagttaacccttcaagttttacaaatacattacttgctt |
7665432 |
T |
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| Q |
108 |
ttaaagcaccagaagcattacaacacaaccaaatttcgcctcgttgtgacgtatactgtctcggtgtagtcatactcgaaatactagccggaaaatttcc |
207 |
Q |
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| T |
7665431 |
ttaaagcaccagaagcattacaacacaaccaaatttcgcctcgttgtgacgtatactgtctcggtgtagtcatactcgaaatactaaccggaaaatttcc |
7665332 |
T |
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| Q |
208 |
ttctcaatatcttagcaacggtaaaggcggaaccgatgtagtacaatgggtagcatcagcaatttctgaaggaagagaagttgaactacttgatcctgaa |
307 |
Q |
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| T |
7665331 |
ttctcaatatcttagcaacggtaaaggcggaaccgatgtagtacaatgggtagcatcagcaatttctgaaggaagagaagttgaactacttgatcctgaa |
7665232 |
T |
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| Q |
308 |
attgcaagtaataaaaatccattaagtgaaatgaaacaacttgttcat |
355 |
Q |
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| T |
7665231 |
attgcaagtaataaaaatccattaagtgaaatgaaacaacttgttcat |
7665184 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 197 - 306
Target Start/End: Complemental strand, 18627356 - 18627247
Alignment:
| Q |
197 |
ggaaaatttccttctcaatatcttagcaacggtaaaggcggaaccgatgtagtacaatgggtagcatcagcaatttctgaaggaagagaagttgaactac |
296 |
Q |
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| T |
18627356 |
ggaaaattcccttctcagtatcatagtaacggtaaaggtggaaccgatgttgttcaatgggtcctcacagcaatttctgagagaagagaagctgaattga |
18627257 |
T |
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| Q |
297 |
ttgatcctga |
306 |
Q |
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| T |
18627256 |
ttgatcctga |
18627247 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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