View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20177_low_3 (Length: 679)

Name: NF20177_low_3
Description: NF20177
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20177_low_3
NF20177_low_3
[»] chr6 (3 HSPs)
chr6 (1-287)||(24197017-24197303)
chr6 (342-558)||(24197358-24197577)
chr6 (445-490)||(18859877-18859922)
[»] chr3 (3 HSPs)
chr3 (1-285)||(47696638-47696922)
chr3 (359-580)||(47697454-47697678)
chr3 (522-556)||(15324578-15324612)
[»] chr5 (3 HSPs)
chr5 (421-558)||(43449223-43449364)
chr5 (454-490)||(10028400-10028436)
chr5 (454-490)||(30343133-30343169)
[»] scaffold0225 (1 HSPs)
scaffold0225 (445-490)||(11104-11149)
[»] scaffold0029 (1 HSPs)
scaffold0029 (445-489)||(139085-139129)
[»] scaffold0002 (1 HSPs)
scaffold0002 (445-489)||(316551-316595)
[»] scaffold0262 (1 HSPs)
scaffold0262 (451-490)||(22387-22426)
[»] chr8 (1 HSPs)
chr8 (522-556)||(14774381-14774415)
[»] chr1 (1 HSPs)
chr1 (445-490)||(14856846-14856891)
[»] scaffold0118 (2 HSPs)
scaffold0118 (454-490)||(22296-22332)
scaffold0118 (454-490)||(25248-25284)
[»] chr7 (3 HSPs)
chr7 (462-506)||(17501878-17501922)
chr7 (462-506)||(17551292-17551336)
chr7 (454-490)||(42235409-42235445)
[»] chr4 (1 HSPs)
chr4 (454-490)||(55555861-55555897)


Alignment Details
Target: chr6 (Bit Score: 283; Significance: 1e-158; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 1 - 287
Target Start/End: Original strand, 24197017 - 24197303
Alignment:
Q  1 cactactattgtttaatccggaatttgcttcattgatttattacaccatgtgaaaagtggaaagaaaataaaacgtttgagttattgtagttatttcaaa 100  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24197017 cactactattgtttaatccagaatttgcttcattgatttattacaccatgtgaaaagtggaaagaaaataaaacgtttgagttattgtagttatttcaaa 24197116  T
Q  101 gccaatttgagaatgcaaattcatttggcatcattgagtgtcaactttataataatgacaaattagtatatttgatacgttaattatttctttcaattaa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24197117 gccaatttgagaatgcaaattcatttggcatcattgagtgtcaactttataataatgacaaattagtatatttgatacgttaattatttctttcaattaa 24197216  T
Q  201 tgatagttatatgtttccatttgtatgaggctagaagtattgacccgataaattattttagaacgaatactatgttaattatgtagt 287  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24197217 tgatagttatatgtttccatttgtatgaggctagaagtattgacccgataaattattttagaacgaatactatgttaattatgtagt 24197303  T

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Target: chr6; HSP #2
Raw Score: 159; E-Value: 3e-84
Query Start/End: Original strand, 342 - 558
Target Start/End: Original strand, 24197358 - 24197577
Alignment:
Q  342 gcacaagaatgtttgttttagtctatgacaccacgtgtcataaccaagttgtgagaggagtatataatataggctagaacacccattgtactctctaa-- 439  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||      
T  24197358 gcacaagaatgtttgttttagtctatgacaccacgtgtcataaccaagttctaagaggagtatataatataggctagaacacccattgtactctctaatt 24197457  T
Q  440 --gtaccattttacttattaaaattcaaacatttaaatgttcaattgtcattcccttttattttgataatacnnnnnnnnattatgatttaatgcgcact 537  Q
      ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||        |||||||||||||| |||||    
T  24197458 atgtaccattttacttattaaaattcaaacatttaaatgttcaattgtcattcccttttcttttgataatac-tttttttattatgatttaatgtgcact 24197556  T
Q  538 atgattatagaaatcaattca 558  Q
    |||||||||||||||||||||    
T  24197557 atgattatagaaatcaattca 24197577  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 445 - 490
Target Start/End: Original strand, 18859877 - 18859922
Alignment:
Q  445 attttacttattaaaattcaaacatttaaatgttcaattgtcattc 490  Q
    ||||| |||||||||| |||||||||||||| | ||||||||||||    
T  18859877 attttccttattaaaactcaaacatttaaatatccaattgtcattc 18859922  T

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Target: chr3 (Bit Score: 281; Significance: 1e-157; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 1 - 285
Target Start/End: Original strand, 47696638 - 47696922
Alignment:
Q  1 cactactattgtttaatccggaatttgcttcattgatttattacaccatgtgaaaagtggaaagaaaataaaacgtttgagttattgtagttatttcaaa 100  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47696638 cactactattgtttaatccagaatttgcttcattgatttattacaccatgtgaaaagtggaaagaaaataaaacgtttgagttattgtagttatttcaaa 47696737  T
Q  101 gccaatttgagaatgcaaattcatttggcatcattgagtgtcaactttataataatgacaaattagtatatttgatacgttaattatttctttcaattaa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47696738 gccaatttgagaatgcaaattcatttggcatcattgagtgtcaactttataataatgacaaattagtatatttgatacgttaattatttctttcaattaa 47696837  T
Q  201 tgatagttatatgtttccatttgtatgaggctagaagtattgacccgataaattattttagaacgaatactatgttaattatgta 285  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47696838 tgatagttatatgtttccatttgtatgaggctagaagtattgacccgataaattattttagaacgaatactatgttaattatgta 47696922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 135; E-Value: 5e-70
Query Start/End: Original strand, 359 - 580
Target Start/End: Original strand, 47697454 - 47697678
Alignment:
Q  359 ttagtctatgacaccacgtgtcataaccaagttgtgagaggagtatataatataggctagaacacccattgtactctctaa----gtaccattttactta 454  Q
    ||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||| ||||||||||||||||||    |||||||||||||||    
T  47697454 ttagtctatgacaccacgtgtcataaccaagttctgagaggagtgtataatataggctagaatacccattgtactctctaattatgtaccattttactta 47697553  T
Q  455 ttaaaattcaaacatttaaatgttcaattgtcattcccttttattttgataatacnnnnnnnnattatgatttaatgcgcactatgattatagaaatcaa 554  Q
    ||||||||||||||||||||||||||||||||||||| | || ||||||||||||        |||||||||||||||||||||||||||||||||||||    
T  47697554 ttaaaattcaaacatttaaatgttcaattgtcattccttgttcttttgataatac-attttttattatgatttaatgcgcactatgattatagaaatcaa 47697652  T
Q  555 ttcannnnnnnaatgatattcttaat 580  Q
    ||||       |||||||||||||||    
T  47697653 ttcatttttttaatgatattcttaat 47697678  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 522 - 556
Target Start/End: Complemental strand, 15324612 - 15324578
Alignment:
Q  522 tgatttaatgcgcactatgattatagaaatcaatt 556  Q
    ||||||||||||||| |||||||||||||||||||    
T  15324612 tgatttaatgcgcaccatgattatagaaatcaatt 15324578  T

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Target: chr5 (Bit Score: 93; Significance: 6e-45; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 93; E-Value: 6e-45
Query Start/End: Original strand, 421 - 558
Target Start/End: Original strand, 43449223 - 43449364
Alignment:
Q  421 cacccattgtactctctaa----gtaccattttacttattaaaattcaaacatttaaatgttcaattgtcattcccttttattttgataatacnnnnnnn 516  Q
    |||||||||||||||||||    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||           
T  43449223 cacccattgtactctctaattatgtaccattttacttattaaaattcaaacatttaaatgttcaattgtcattcccttttcttttgataatacttttttt 43449322  T
Q  517 nattatgatttaatgcgcactatgattatagaaatcaattca 558  Q
     |||||||||||||||||||||||||||||| ||||||||||    
T  43449323 tattatgatttaatgcgcactatgattatagcaatcaattca 43449364  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 454 - 490
Target Start/End: Original strand, 10028400 - 10028436
Alignment:
Q  454 attaaaattcaaacatttaaatgttcaattgtcattc 490  Q
    ||||||| |||||||||||||| ||||||||||||||    
T  10028400 attaaaactcaaacatttaaatattcaattgtcattc 10028436  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 454 - 490
Target Start/End: Complemental strand, 30343169 - 30343133
Alignment:
Q  454 attaaaattcaaacatttaaatgttcaattgtcattc 490  Q
    ||||||| |||||||||||||| ||||||||||||||    
T  30343169 attaaaactcaaacatttaaatattcaattgtcattc 30343133  T

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Target: scaffold0225 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0225
Description:

Target: scaffold0225; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 445 - 490
Target Start/End: Complemental strand, 11149 - 11104
Alignment:
Q  445 attttacttattaaaattcaaacatttaaatgttcaattgtcattc 490  Q
    ||||| |||||||||| |||||||||||||| ||||||||||||||    
T  11149 attttccttattaaaactcaaacatttaaattttcaattgtcattc 11104  T

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Target: scaffold0029 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 445 - 489
Target Start/End: Complemental strand, 139129 - 139085
Alignment:
Q  445 attttacttattaaaattcaaacatttaaatgttcaattgtcatt 489  Q
    ||||| |||||||||| |||||||||||||| |||||||||||||    
T  139129 attttccttattaaaactcaaacatttaaatattcaattgtcatt 139085  T

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Target: scaffold0002 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 445 - 489
Target Start/End: Complemental strand, 316595 - 316551
Alignment:
Q  445 attttacttattaaaattcaaacatttaaatgttcaattgtcatt 489  Q
    ||||| |||||||||| |||||||||||||| |||||||||||||    
T  316595 attttccttattaaaactcaaacatttaaatattcaattgtcatt 316551  T

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Target: scaffold0262 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0262
Description:

Target: scaffold0262; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 451 - 490
Target Start/End: Original strand, 22387 - 22426
Alignment:
Q  451 cttattaaaattcaaacatttaaatgttcaattgtcattc 490  Q
    |||||||||| |||||||||||||| ||||||||||||||    
T  22387 cttattaaaaatcaaacatttaaatattcaattgtcattc 22426  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 522 - 556
Target Start/End: Original strand, 14774381 - 14774415
Alignment:
Q  522 tgatttaatgcgcactatgattatagaaatcaatt 556  Q
    ||||||||||||||| |||||||||||||||||||    
T  14774381 tgatttaatgcgcaccatgattatagaaatcaatt 14774415  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 445 - 490
Target Start/End: Original strand, 14856846 - 14856891
Alignment:
Q  445 attttacttattaaaattcaaacatttaaatgttcaattgtcattc 490  Q
    ||||| |||||||||| |||||||||||||| | ||||||||||||    
T  14856846 attttccttattaaaactcaaacatttaaatatccaattgtcattc 14856891  T

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Target: scaffold0118 (Bit Score: 29; Significance: 0.000001; HSPs: 2)
Name: scaffold0118
Description:

Target: scaffold0118; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 454 - 490
Target Start/End: Complemental strand, 22332 - 22296
Alignment:
Q  454 attaaaattcaaacatttaaatgttcaattgtcattc 490  Q
    ||||||| |||||||||||||| ||||||||||||||    
T  22332 attaaaactcaaacatttaaatattcaattgtcattc 22296  T

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Target: scaffold0118; HSP #2
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 454 - 490
Target Start/End: Complemental strand, 25284 - 25248
Alignment:
Q  454 attaaaattcaaacatttaaatgttcaattgtcattc 490  Q
    ||||||| |||||||||||||| ||||||||||||||    
T  25284 attaaaactcaaacatttaaatattcaattgtcattc 25248  T

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Target: chr7 (Bit Score: 29; Significance: 0.000001; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 462 - 506
Target Start/End: Complemental strand, 17501922 - 17501878
Alignment:
Q  462 tcaaacatttaaatgttcaattgtcattcccttttattttgataa 506  Q
    |||||||||||||| |  |||||||||||| ||||||||||||||    
T  17501922 tcaaacatttaaatatctaattgtcattcctttttattttgataa 17501878  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 462 - 506
Target Start/End: Original strand, 17551292 - 17551336
Alignment:
Q  462 tcaaacatttaaatgttcaattgtcattcccttttattttgataa 506  Q
    |||||||||||||| |  |||||||||||| ||||||||||||||    
T  17551292 tcaaacatttaaatatctaattgtcattcctttttattttgataa 17551336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 454 - 490
Target Start/End: Original strand, 42235409 - 42235445
Alignment:
Q  454 attaaaattcaaacatttaaatgttcaattgtcattc 490  Q
    ||||||| |||||||||||||| ||||||||||||||    
T  42235409 attaaaactcaaacatttaaatattcaattgtcattc 42235445  T

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Target: chr4 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 454 - 490
Target Start/End: Complemental strand, 55555897 - 55555861
Alignment:
Q  454 attaaaattcaaacatttaaatgttcaattgtcattc 490  Q
    ||||||| |||||||||||||| ||||||||||||||    
T  55555897 attaaaactcaaacatttaaatattcaattgtcattc 55555861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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