View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20177_low_30 (Length: 351)
Name: NF20177_low_30
Description: NF20177
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20177_low_30 |
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Alignment Details
Target: chr5 (Bit Score: 243; Significance: 1e-135; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 34 - 340
Target Start/End: Original strand, 22630125 - 22630431
Alignment:
| Q |
34 |
atacatttcctcatatactttctatttctttccaatagcgtttttactttctcatttcacttcctgannnnnnnncaaactaagtaaaaaatctcatgaa |
133 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
22630125 |
atacatttcctcatatcctttctatttctttccaatagcgtttttactttctcatttcacttcctgattttttttcaaactaagtaaaaaatctcatgaa |
22630224 |
T |
|
| Q |
134 |
tatatcaagtaccctttttagatgttgtaatttgtacttatttatccaatttggctttgattgtgcgattaatcattttaagtatgtatggccatttctt |
233 |
Q |
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| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||| |
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| T |
22630225 |
tgtatcaattaccctttttagatgttgtaatttgtacttatttatccaatttggctttgattgtgcgattaatcattttaagtatgtctagccatttctt |
22630324 |
T |
|
| Q |
234 |
tttggtggctgattatggataaatttggcacagtttgcatataagaatgttggccctaaatgttgtggtgtctctctcattccactttttgttattttat |
333 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
22630325 |
tttggtggatgattatggataaatttggcacagtttgcatataagaatgctggccctaaatgttgtggtgtctctctcaacccactttttgttattttat |
22630424 |
T |
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| Q |
334 |
ccccttt |
340 |
Q |
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|| |||| |
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| T |
22630425 |
cctcttt |
22630431 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 34 - 341
Target Start/End: Complemental strand, 23122453 - 23122145
Alignment:
| Q |
34 |
atacatttcctcatatactttctatttctttccaatagcgtttttactttctcatttcacttcctgannnnnnnn-caaactaagtaaaaaatctcatga |
132 |
Q |
| |
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|||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
23122453 |
atacatttcctcatatcctttatatttctttccaatagcgtttttactttctcatttcacttcctgatttttttttcaaactaagtaaaaaatctcatga |
23122354 |
T |
|
| Q |
133 |
atatatcaagtaccctttttagatgttgtaatttgtacttatttatccaatttggctttgattgtgcgattaatcattttaagtatgtatggccatttct |
232 |
Q |
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|| |||||| ||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||| ||||||| ||||||||||| |
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| T |
23122353 |
atgtatcaattaccctttttagatgttgtaatttgtatttatttatcctatttggctttgattgtgcgattaatcatttttagtatgtctggccatttct |
23122254 |
T |
|
| Q |
233 |
ttttggtggctgattatggataaatttggcacagtttgcatataagaatgttggccctaaatgttgtggtgtctctctcattccactttttgttatttta |
332 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
23122253 |
ttttggtggctgattatggataaatttggcacagtttgcatataagaatgctggccctaaatgttgtggtgtctctctcaatccactttttgttatttta |
23122154 |
T |
|
| Q |
333 |
tcccctttg |
341 |
Q |
| |
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||| ||||| |
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| T |
23122153 |
tcctctttg |
23122145 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 275 - 335
Target Start/End: Original strand, 24070417 - 24070479
Alignment:
| Q |
275 |
taagaatgttggccctaaatg--ttgtggtgtctctctcattccactttttgttattttatcc |
335 |
Q |
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||||||||||||||||||||| ||||||| | |||||| |||||||||| ||||||||||| |
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| T |
24070417 |
taagaatgttggccctaaatgatttgtggtctttctctctatccactttttcttattttatcc |
24070479 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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