View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20177_low_35 (Length: 318)

Name: NF20177_low_35
Description: NF20177
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20177_low_35
NF20177_low_35
[»] chr3 (4 HSPs)
chr3 (4-309)||(52798420-52798725)
chr3 (176-296)||(38849050-38849169)
chr3 (198-296)||(51448946-51449043)
chr3 (88-137)||(50630446-50630495)
[»] chr1 (4 HSPs)
chr1 (156-309)||(32405655-32405806)
chr1 (88-311)||(49348529-49348750)
chr1 (88-311)||(51441891-51442113)
chr1 (224-294)||(35829652-35829721)
[»] chr7 (5 HSPs)
chr7 (88-311)||(33350933-33351155)
chr7 (88-296)||(36650942-36651149)
chr7 (208-280)||(48056063-48056134)
chr7 (120-247)||(20499105-20499232)
chr7 (198-296)||(11592637-11592734)
[»] chr5 (6 HSPs)
chr5 (224-311)||(1288791-1288877)
chr5 (88-311)||(20317924-20318146)
chr5 (198-289)||(17212225-17212314)
chr5 (198-294)||(26909-27004)
chr5 (224-311)||(2076737-2076823)
chr5 (198-311)||(24177457-24177569)
[»] chr2 (5 HSPs)
chr2 (118-283)||(7789632-7789795)
chr2 (121-291)||(37281060-37281228)
chr2 (255-294)||(11502806-11502845)
chr2 (120-167)||(13148398-13148445)
chr2 (224-296)||(8179741-8179812)
[»] chr8 (2 HSPs)
chr8 (88-311)||(36544085-36544307)
chr8 (198-296)||(41148438-41148534)
[»] chr6 (4 HSPs)
chr6 (198-277)||(14167609-14167687)
chr6 (59-294)||(26290734-26290967)
chr6 (198-311)||(6082322-6082434)
chr6 (119-296)||(5260406-5260582)
[»] chr4 (2 HSPs)
chr4 (88-294)||(48623654-48623859)
chr4 (198-311)||(23907539-23907651)
[»] scaffold0113 (1 HSPs)
scaffold0113 (88-311)||(13385-13606)
[»] scaffold0073 (2 HSPs)
scaffold0073 (151-264)||(34115-34227)
scaffold0073 (176-264)||(26816-26903)


Alignment Details
Target: chr3 (Bit Score: 258; Significance: 1e-143; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 4 - 309
Target Start/End: Complemental strand, 52798725 - 52798420
Alignment:
Q  4 tctatcaattgttttctccatattaataaaaactaagtgtagnnnnnnnngtccatctgatattgtttcatcacacaccatagcaagtagatagcttcca 103  Q
    ||||||||||||||||||||||||||||||||||||||||||        ||||||||||||| |||||||||||| | |||||||||||||||||||||    
T  52798725 tctatcaattgttttctccatattaataaaaactaagtgtagtattttttgtccatctgatatcgtttcatcacacgctatagcaagtagatagcttcca 52798626  T
Q  104 tggtcgatctctctaacataaaatcaaattggttttcaataacttgagtctattttcttagtctctgctaactcactattttccacaactccaaggtatg 203  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  52798625 tggtcgatctctctaacataaaatcaaattggttttcaataacttgagtctattttcttagtctctgctaactcactattttccacaactccgaggtatg 52798526  T
Q  204 actcataagtttaatctctatataatttgcacaattttgtatatacccccatgttcttatagatcaaaattaaagtgtttattctccactcgttcaacat 303  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52798525 actcataagtttaatctctatataattttcacaattttgtatatacccccatgttcttatagatcaaaattaaagtgtttattctccactcgttcaacat 52798426  T
Q  304 attctt 309  Q
     |||||    
T  52798425 tttctt 52798420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 176 - 296
Target Start/End: Complemental strand, 38849169 - 38849050
Alignment:
Q  176 tcactattttccacaactccaaggtatgactcataagtttaatctctatataatttgcacaattttgtatatacccccatgttcttatagatcaaaatta 275  Q
    ||||| ||| ||| |||| || |||||||||||| ||||||||  |  ||||||| || ||||||||||||| ||||| |||||||||||||   |||||    
T  38849169 tcactctttcccataacttcatggtatgactcattagtttaattcccttataattcgcgcaattttgtatat-cccccttgttcttatagattggaatta 38849071  T
Q  276 aagtgtttattctccactcgt 296  Q
    |||||||| ||||||||||||    
T  38849070 aagtgtttcttctccactcgt 38849050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 198 - 296
Target Start/End: Original strand, 51448946 - 51449043
Alignment:
Q  198 ggtatgactcataagtttaatctctatataatttgcacaattttgtatatacccccatgttcttatagatcaaaattaaagtgtttattctccactcgt 296  Q
    |||||||||||| || |||||  |  ||||||| || ||||||||||||| ||| | |||||||||||||   ||||||||||||| ||||||||||||    
T  51448946 ggtatgactcattagcttaattcccctataattcgcgcaattttgtatat-ccctcttgttcttatagattggaattaaagtgtttcttctccactcgt 51449043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 88 - 137
Target Start/End: Original strand, 50630446 - 50630495
Alignment:
Q  88 aagtagatagcttccatggtcgatctctctaacataaaatcaaattggtt 137  Q
    |||||||| |||||||||||||| ||| | | ||||||||||||||||||    
T  50630446 aagtagattgcttccatggtcgacctcgcaagcataaaatcaaattggtt 50630495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 59; Significance: 5e-25; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 156 - 309
Target Start/End: Original strand, 32405655 - 32405806
Alignment:
Q  156 ttttcttagtctctgctaactcactattttccacaactccaaggtatgactcataagtttaatctctatataatttgcacaattttgtatatacccccat 255  Q
    ||||||||||||| ||| | ||||  ||| ||| |||| || ||||||||||||||| ||||| ||  ||||||||||||||||||||||||  | || |    
T  32405655 ttttcttagtctccgctcaatcaccttttcccataacttcatggtatgactcataaggttaatttccctataatttgcacaattttgtatat--cgcctt 32405752  T
Q  256 gttcttatagatcaaaattaaagtgtttattctccactcgttcaacatattctt 309  Q
    ||||| |||||||| ||||||||||||| |||||||||| | |||||| |||||    
T  32405753 gttctaatagatcagaattaaagtgtttcttctccactcatccaacattttctt 32405806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 88 - 311
Target Start/End: Original strand, 49348529 - 49348750
Alignment:
Q  88 aagtagatagcttccatggtcgatctctctaacataaaatcaaattggttttcaataacttgagtctattttcttagtctctgctaactcactattttcc 187  Q
    |||||||| |||||||| ||||| ||| |   ||||||| |||||||||| || |||||| ||||||  |||||||||||    |   ||||  ||| ||    
T  49348529 aagtagattgcttccatagtcgacctcccaggcataaaaccaaattggttatccataactcgagtcttctttcttagtcttctttcgatcaccctttccc 49348628  T
Q  188 acaactccaaggtatgactcataagtttaatctcta-tataatttgcacaattttgtatatacccccatgttcttatagatcaaaattaaagtgtttatt 286  Q
    |  ||| || |||||||||||| || ||||| |||  ||||||| || ||||||||||||  ||||| |||||||||||||   |||||||||| || ||    
T  49348629 atgacttcatggtatgactcattagcttaat-tctcctataattcgcgcaattttgtata--cccccttgttcttatagattggaattaaagtgcttctt 49348725  T
Q  287 ctccactcgttcaacatattcttcg 311  Q
    |||||||||| | |||| |||||||    
T  49348726 ctccactcgtccgacattttcttcg 49348750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 88 - 311
Target Start/End: Original strand, 51441891 - 51442113
Alignment:
Q  88 aagtagatagcttccatggtcgatctctctaacataaaatcaaattggttttcaataacttgagtctattttcttagtctctgctaactcactattttcc 187  Q
    |||||||| |||||||| ||||| ||| |   ||||||| |||||||||| ||  ||||| ||||||  |||||||||||    |   ||||  ||| ||    
T  51441891 aagtagattgcttccatagtcgacctcccaggcataaaaccaaattggttatccgtaactcgagtctcctttcttagtcttctttcgatcaccctttccc 51441990  T
Q  188 acaactccaaggtatgactcataagtttaatctctatataatttgcacaattttgtatatacccccatgttcttatagatcaaaattaaagtgtttattc 287  Q
    | |||| || |||||||||||| || |||||  |  ||||||| ||   ||||||||||| ||||| |||||||||||||   |||||||||| || |||    
T  51441991 ataacttcatggtatgactcattagcttaattcccctataattcgcgtgattttgtatat-cccccttgttcttatagattggaattaaagtgcttcttc 51442089  T
Q  288 tccactcgttcaacatattcttcg 311  Q
    ||||||||| | |||| |||||||    
T  51442090 tccactcgtccgacattttcttcg 51442113  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 224 - 294
Target Start/End: Original strand, 35829652 - 35829721
Alignment:
Q  224 tataatttgcacaattttgtatatacccccatgttcttatagatcaaaattaaagtgtttattctccactc 294  Q
    |||||||||||||||||| ||||| ||  | ||||||||||||||  |||||||||| || ||||||||||    
T  35829652 tataatttgcacaattttttatat-ccatcttgttcttatagatcggaattaaagtgcttcttctccactc 35829721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 45; Significance: 1e-16; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 88 - 311
Target Start/End: Original strand, 33350933 - 33351155
Alignment:
Q  88 aagtagatagcttccatggtcgatctctctaacataaaatcaaattggttttcaataacttgagtctattttcttagtct-ctgctaactcactattttc 186  Q
    |||||||| |||||||| ||||| ||| | | ||||||| |||||||||| ||  ||||| ||||||  ||||||||||| ||  | | ||||  ||| |    
T  33350933 aagtagattgcttccatagtcgacctcccaagcataaaaccaaattggttatccgtaactagagtctcctttcttagtcttcttttga-tcaccctttcc 33351031  T
Q  187 cacaactccaaggtatgactcataagtttaatctctatataatttgcacaattttgtatatacccccatgttcttatagatcaaaattaaagtgtttatt 286  Q
    ||||||| || |||||||||||| || |||||  |  ||||||| || ||||||||||||| ||||| ||||||||| |||   |||||||||| || ||    
T  33351032 cacaacttcatggtatgactcattagcttaattcccctataattcgcgcaattttgtatat-cccccttgttcttatcgattggaattaaagtgcttctt 33351130  T
Q  287 ctccactcgttcaacatattcttcg 311  Q
    |||||||||| | |||| |||||||    
T  33351131 ctccactcgtccgacattttcttcg 33351155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 88 - 296
Target Start/End: Complemental strand, 36651149 - 36650942
Alignment:
Q  88 aagtagatagcttccatggtcgatctctctaacataaaatcaaattggttttcaataacttgagtctattttcttagtctctgctaactcactattttcc 187  Q
    |||||||| ||||||||  |||| ||| |  |||||||| |||||||||| ||  ||||| ||||||  |||||||||||    | | ||||  ||| ||    
T  36651149 aagtagattgcttccataatcgacctcccagacataaaaccaaattggttatccgtaactcgagtctcctttcttagtcttctttcaatcaccctttccc 36651050  T
Q  188 acaactccaaggtatgactcataagtttaatctcta-tataatttgcacaattttgtatatacccccatgttcttatagatcaaaattaaagtgtttatt 286  Q
    | |||| || |||||||||||| || ||||| |||  |||||||  | ||||||||||||| ||||| |||||||||||||   |||||||||| || ||    
T  36651049 ataacttcatggtatgactcattagcttaat-tctcctataattcacgcaattttgtatat-cccccttgttcttatagattggaattaaagtgattctt 36650952  T
Q  287 ctccactcgt 296  Q
    ||||||||||    
T  36650951 ctccactcgt 36650942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 208 - 280
Target Start/End: Original strand, 48056063 - 48056134
Alignment:
Q  208 ataagtttaatctctatataatttgcacaattttgtatatacccccatgttcttatagatcaaaattaaagtg 280  Q
    |||||||||||| || |||||||||||||||||||||||| |||   || ||||| |||||| ||||||||||    
T  48056063 ataagtttaatcactctataatttgcacaattttgtatat-cccagttgctcttacagatcagaattaaagtg 48056134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 120 - 247
Target Start/End: Complemental strand, 20499232 - 20499105
Alignment:
Q  120 cataaaatcaaattggttttcaataacttgagtctattttcttagtctctgctaactcactattttccacaactccaaggtatgactcataagtttaatc 219  Q
    ||||||| |||||||||| ||||||||||| |  |||||||||||||||   | | ||||| ||| | | |||| ||  ||| | |  ||||||||||||    
T  20499232 cataaaaccaaattggttatcaataacttgcgcttattttcttagtctccattcaatcactctttcctataactacatagtaggtcctataagtttaatc 20499133  T
Q  220 tctatataatttgcacaattttgtatat 247  Q
     |  ||||||||||||||||||||||||    
T  20499132 accctataatttgcacaattttgtatat 20499105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 198 - 296
Target Start/End: Complemental strand, 11592734 - 11592637
Alignment:
Q  198 ggtatgactcataagtttaatctctatataatttgcacaattttgtatatacccccatgttcttatagatcaaaattaaagtgtttattctccactcgt 296  Q
    |||||||||||| || |||||  |  ||||||| || ||||||||||||| ||||| |||| ||||||||   |||||||||| || ||||||||||||    
T  11592734 ggtatgactcattagcttaattcccctataattcgcgcaattttgtatat-cccccttgtttttatagattggaattaaagtgcttcttctccactcgt 11592637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 44; Significance: 5e-16; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 224 - 311
Target Start/End: Original strand, 1288791 - 1288877
Alignment:
Q  224 tataatttgcacaattttgtatatacccccatgttcttatagatcaaaattaaagtgtttattctccactcgttcaacatattcttcg 311  Q
    ||||||| |||||||||||||||| ||||| |||||||||||||   |||||||||| || |||||||||||||| |||| |||||||    
T  1288791 tataattcgcacaattttgtatat-cccccttgttcttatagattggaattaaagtgcttcttctccactcgttcgacattttcttcg 1288877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 88 - 311
Target Start/End: Complemental strand, 20318146 - 20317924
Alignment:
Q  88 aagtagatagcttccatggtcgatctctctaacataaaatcaaattggttttcaataacttgagtctattttcttagtctctgctaactcactattttcc 187  Q
    |||||||| |||||||| ||||| ||| |   ||||||| |||||||||| ||  ||||| ||||||  |||||||||||    |   ||||  ||| ||    
T  20318146 aagtagattgcttccatagtcgacctcccaggcataaaaccaaattggttatctgtaactcgagtctcctttcttagtcttctttcgatcaccctttccc 20318047  T
Q  188 acaactccaaggtatgactcataagtttaat-ctctatataatttgcacaattttgtatatacccccatgttcttatagatcaaaattaaagtgtttatt 286  Q
    | |||| || |||||||||||| || ||||| | ||| ||||||||| ||||||||||||| ||||| |||||||||||||   |||||||||| || ||    
T  20318046 ataacttcatggtatgactcattagcttaattcccta-ataatttgcgcaattttgtatat-cccccttgttcttatagattggaattaaagtgcttctt 20317949  T
Q  287 ctccactcgttcaacatattcttcg 311  Q
    |||||||||| | |||| |||||||    
T  20317948 ctccactcgtccgacattttcttcg 20317924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 198 - 289
Target Start/End: Complemental strand, 17212314 - 17212225
Alignment:
Q  198 ggtatgactcataagtttaatctctatataatttgcacaattttgtatatacccccatgttcttatagatcaaaattaaagtgtttattctc 289  Q
    ||||| |||||||||||||| | || |||||||||||||||||||||||| ||||| |||||||| |||||   | ||||||| ||||||||    
T  17212314 ggtataactcataagtttaacccct-tataatttgcacaattttgtatat-cccccttgttcttaaagatcggcactaaagtgcttattctc 17212225  T

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Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 198 - 294
Target Start/End: Complemental strand, 27004 - 26909
Alignment:
Q  198 ggtatgactcataagtttaatctctatataatttgcacaattttgtatatacccccatgttcttatagatcaaaattaaagtgtttattctccactc 294  Q
    |||||||||||| | ||||||  |  ||||||| | |||||||||||||| || || |||||||||||| || ||||||||||||| || |||||||    
T  27004 ggtatgactcattaatttaattcccctataattcgaacaattttgtatat-cctccttgttcttatagaacagaattaaagtgtttcttttccactc 26909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 224 - 311
Target Start/End: Original strand, 2076737 - 2076823
Alignment:
Q  224 tataatttgcacaattttgtatatacccccatgttcttatagatcaaaattaaagtgtttattctccactcgttcaacatattcttcg 311  Q
    ||||||| || ||||||||||| | ||||| |||||||||||||   |||||||||| || |||||||||||| | |||| |||||||    
T  2076737 tataattcgcgcaattttgtatgt-cccccttgttcttatagattggaattaaagtgcttcttctccactcgtccgacattttcttcg 2076823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 198 - 311
Target Start/End: Complemental strand, 24177569 - 24177457
Alignment:
Q  198 ggtatgactcataagtttaatctctatataatttgcacaattttgtatatacccccatgttcttatagatcaaaattaaagtgtttattctccactcgtt 297  Q
    |||||||||||| || |||||  |  |||||||  | ||||||||||||| ||||| |||||||||||||   |||||||||| || |||||||||| ||    
T  24177569 ggtatgactcattagcttaattcccctataattcacgcaattttgtatat-cccccttgttcttatagattggaattaaagtgctttttctccactcatt 24177471  T
Q  298 caacatattcttcg 311  Q
    |  ||| |||||||    
T  24177470 cggcattttcttcg 24177457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 118 - 283
Target Start/End: Original strand, 7789632 - 7789795
Alignment:
Q  118 aacataaaatcaaattggttttcaataacttgagtctattttcttagtctctgctaactcactattttccacaactccaaggtatgactcataagtttaa 217  Q
    ||||||||| ||||||| || | | ||||| |||||| |||| ||| ||| || | | ||||| ||||||| || |  | ||||||||||||||||||||    
T  7789632 aacataaaaccaaattgattatgagtaactcgagtctcttttgttaatctttgttcaatcactcttttccataatttaatggtatgactcataagtttaa 7789731  T
Q  218 tctctatataatttgcacaattttgtatatacccccatgttcttatagatcaaaattaaagtgttt 283  Q
    |  |  || ||||| |||||| |||||||  || || |||||||||||||||||||||||||||||    
T  7789732 ttgccttaaaatttccacaatgttgtata--ccaccttgttcttatagatcaaaattaaagtgttt 7789795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 121 - 291
Target Start/End: Complemental strand, 37281228 - 37281060
Alignment:
Q  121 ataaaatcaaattggttttcaataacttgagtctattttcttagtctctgctaactcactattttccacaactccaaggtatgactcataagtttaatct 220  Q
    |||||| |||||||||| ||| |||||| ||| | ||| ||||||||  | | | ||||| |||  || |||| || ||||||| |||| |||||||| |    
T  37281228 ataaaaccaaattggttatcagtaacttaagtttgtttacttagtcttcgttcaatcactttttatcataacttcatggtatgattcattagtttaat-t 37281130  T
Q  221 cta-tataatttgcacaattttgtatatacccccatgttcttatagatcaaaattaaagtgtttattctcca 291  Q
    ||  ||||||| || |||||||||||||  |||| |||||||||||||| ||||||||| |||| |||||||    
T  37281129 ctcctataattcgcgcaattttgtatat--ccccttgttcttatagatcgaaattaaagcgtttcttctcca 37281060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 255 - 294
Target Start/End: Original strand, 11502806 - 11502845
Alignment:
Q  255 tgttcttatagatcaaaattaaagtgtttattctccactc 294  Q
    |||||||||||||| |||||||||||||| ||||||||||    
T  11502806 tgttcttatagatcgaaattaaagtgtttcttctccactc 11502845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 120 - 167
Target Start/End: Complemental strand, 13148445 - 13148398
Alignment:
Q  120 cataaaatcaaattggttttcaataacttgagtctattttcttagtct 167  Q
    |||||||||||||||||| || |||||| |||||| ||||||||||||    
T  13148445 cataaaatcaaattggttatcgataactcgagtctcttttcttagtct 13148398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 224 - 296
Target Start/End: Complemental strand, 8179812 - 8179741
Alignment:
Q  224 tataatttgcacaattttgtatatacccccatgttcttatagatcaaaattaaagtgtttattctccactcgt 296  Q
    ||||||| || ||||||||||||| || || |||||||||||||   |||||||||| || ||||||||||||    
T  8179812 tataattcgcgcaattttgtatat-cctccttgttcttatagattggaattaaagtgcttcttctccactcgt 8179741  T

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Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 88 - 311
Target Start/End: Complemental strand, 36544307 - 36544085
Alignment:
Q  88 aagtagatagcttccatggtcgatctctctaacataaaatcaaattggttttcaataacttgagtctattttcttagtctctgctaactcactattttcc 187  Q
    |||||||| |||||||| ||||| ||| |   ||||||| |||||||||| ||  ||||||||||||  |||||||||||    |   ||||  ||| ||    
T  36544307 aagtagattgcttccatagtcgacctcccaggcataaaaccaaattggttatccgtaacttgagtctcctttcttagtcttctttcgatcaccctttccc 36544208  T
Q  188 acaactccaaggtatgactcataagtttaatctctatataatttgcacaattttgtatatacccccatgttcttatagatcaaaattaaagtgtttattc 287  Q
    | |||| || |||||||||||| || |||||  |  ||| ||| || ||||||||||||| ||||| |||||||||||||   |||||||||| || |||    
T  36544207 ataacttcatggtatgactcattagcttaattcccctatgattcgcgcaattttgtatat-cccccttgttcttatagattggaattaaagtgcttcttc 36544109  T
Q  288 tccactcgttcaacatattcttcg 311  Q
    ||||||||| | |||| |||||||    
T  36544108 tccactcgtccgacattttcttcg 36544085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 198 - 296
Target Start/End: Complemental strand, 41148534 - 41148438
Alignment:
Q  198 ggtatgactcataagtttaatctctatataatttgcacaattttgtatatacccccatgttcttatagatcaaaattaaagtgtttattctccactcgt 296  Q
    |||||||||||||||||||||| |  ||| || | | |||||||||||||  |||| | |||||||| |||  | ||||||||||| ||||||||||||    
T  41148534 ggtatgactcataagtttaatccccctatcatatacgcaattttgtatat--cccctttttcttataaatcgtagttaaagtgtttcttctccactcgt 41148438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 198 - 277
Target Start/End: Original strand, 14167609 - 14167687
Alignment:
Q  198 ggtatgactcataagtttaatctctatataatttgcacaattttgtatatacccccatgttcttatagatcaaaattaaa 277  Q
    ||||||||||||||||||||| | | ||||||||| | |||||||||||| || |||||||||||||||| | |||||||    
T  14167609 ggtatgactcataagtttaatttttctataatttgtaaaattttgtatat-cctccatgttcttatagataataattaaa 14167687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 59 - 294
Target Start/End: Complemental strand, 26290967 - 26290734
Alignment:
Q  59 tctgatattgtttcatcacacaccatagcaagtagatagcttccatggtcgatctctctaacataaaatcaaattggttttcaataacttgagtctattt 158  Q
    |||||||| | | ||||||||| |  ||||||||||| ||||||||  |||| ||  | |||||||||  |||||| || ||||||||||||| || |||    
T  26290967 tctgatatcgctccatcacacatcgaagcaagtagatcgcttccata-tcgaccttccaaacataaaactaaattgattgtcaataacttgagactcttt 26290869  T
Q  159 tcttagtctctgctaactcactattttccacaactccaaggtatgactcataagtttaatctctatataatttgcacaattttgtatatacccccatgtt 258  Q
    | |||||||  | | | ||||| ||||    ||||  | ||||||||||||||| |||||  |  ||| ||| |||||||||||||||| ||||| ||||    
T  26290868 ttttagtcttcgttcaatcactctttttattaactttatggtatgactcataaggttaattcccctatcattcgcacaattttgtatat-cccccttgtt 26290770  T
Q  259 cttatagatcaaaattaaagtgtttattctccactc 294  Q
    ||||| ||||  |||||||||||||  |||||||||    
T  26290769 cttatggatcgtaattaaagtgtttcatctccactc 26290734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 198 - 311
Target Start/End: Complemental strand, 6082434 - 6082322
Alignment:
Q  198 ggtatgactcataagtttaatctctatataatttgcacaattttgtatatacccccatgttcttatagatcaaaattaaagtgtttattctccactcgtt 297  Q
    |||||||||||| || |||||  |  ||||||| || ||||||||||||| ||||  |||||||||||||   |||||||||| || ||||||||||||     
T  6082434 ggtatgactcattagcttaattcccctataattcgcgcaattttgtatatgcccct-tgttcttatagattggaattaaagtgcttcttctccactcgtc 6082336  T
Q  298 caacatattcttcg 311  Q
    | |||| |||||||    
T  6082335 cgacattttcttcg 6082322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 119 - 296
Target Start/End: Original strand, 5260406 - 5260582
Alignment:
Q  119 acataaaatcaaattggttttcaataacttgagtctattttcttagtctctgctaactcactattttccacaactccaaggtatgactcataagtttaat 218  Q
    |||||||| |||||||||| ||  |||| ||||||| |||||| |||||  ||| | | ||  ||| ||| |||| || |||||||||||| || |||||    
T  5260406 acataaaaccaaattggttatccgtaacgtgagtctcttttctaagtcttcgctcaattaccctttcccataacttcatggtatgactcattagcttaat 5260505  T
Q  219 ctctatataatttgcacaattttgtatatacccccatgttcttatagatcaaaattaaagtgtttattctccactcgt 296  Q
      |  ||||||| || || | |||||||| ||||| |||||||||||||   |||||| ||| || ||||||||||||    
T  5260506 tcccctataattcgcgcattgttgtatat-cccccttgttcttatagattggaattaaggtgattcttctccactcgt 5260582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 88 - 294
Target Start/End: Original strand, 48623654 - 48623859
Alignment:
Q  88 aagtagatagcttccatggtcgatctctctaacataaaatcaaattggttttcaataacttgagtctattttcttagtctctgctaactcactattttcc 187  Q
    |||||||| |||||||| ||||| ||| |   ||||||| |||||||||| ||  ||||| ||||||  |||||||||||    |   ||||  ||| ||    
T  48623654 aagtagattgcttccatagtcgacctcccaggcataaaaccaaattggttatctgtaactcgagtcttctttcttagtcttctttcgatcaccctttccc 48623753  T
Q  188 acaactccaaggtatgactcataagtttaatctctatataatttgcacaattttgtatatacccccatgttcttatagatcaaaattaaagtgtttattc 287  Q
    | |||| || |||||||||||| || |||||  |  ||||||| || ||||||||||||| ||||| |||||||||||||   |||||||||| ||||||    
T  48623754 ataacttcatggtatgactcattagcttaattcccctataattcgcgcaattttgtatat-cccccttgttcttatagattggaattaaagtgcttattc 48623852  T
Q  288 tccactc 294  Q
    |||||||    
T  48623853 tccactc 48623859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 198 - 311
Target Start/End: Original strand, 23907539 - 23907651
Alignment:
Q  198 ggtatgactcataagtttaatctctatataatttgcacaattttgtatatacccccatgttcttatagatcaaaattaaagtgtttattctccactcgtt 297  Q
    |||||||||||| || |||||  |  ||||||| ||  |||||||||||| ||||| |||||||||| ||   |||||||||| || ||||||||||||     
T  23907539 ggtatgactcattagcttaattcccctataattcgcggaattttgtatat-cccccttgttcttataaattggaattaaagtgcttcttctccactcgtc 23907637  T
Q  298 caacatattcttcg 311  Q
    || ||| |||||||    
T  23907638 cagcattttcttcg 23907651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0113 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: scaffold0113
Description:

Target: scaffold0113; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 88 - 311
Target Start/End: Original strand, 13385 - 13606
Alignment:
Q  88 aagtagatagcttccatggtcgatctctctaacataaaatcaaattggttttcaataacttgagtctattttcttagtctctgctaactcactattttcc 187  Q
    |||||||| | |||||| ||||| ||| | | ||||||| |||||||||| ||  ||||| ||||||  | |||||||||  | | | |||| |||| ||    
T  13385 aagtagatcgtttccatagtcgacctcccaagcataaaaccaaattggttatccgtaactggagtcttctctcttagtcttcgttcaatcaccatttccc 13484  T
Q  188 acaactccaaggtatgactcataagtttaatctctatataatttgcacaattttgtatatacccccatgttcttatagatcaaaattaaagtgtttattc 287  Q
    | |||| || |||||||||||| || |||||  |  ||||||| ||  | |||||||||| |||   |||||||||||||   ||||||||||||| |||    
T  13485 ataacttcatggtatgactcattagcttaattcccctataattcgcgtagttttgtatattccct--tgttcttatagattggaattaaagtgtttgttc 13582  T
Q  288 tccactcgttcaacatattcttcg 311  Q
    ||||||||| | |||| |||||||    
T  13583 tccactcgtccgacattttcttcg 13606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0073 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: scaffold0073
Description:

Target: scaffold0073; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 151 - 264
Target Start/End: Original strand, 34115 - 34227
Alignment:
Q  151 gtctattttcttagtctctgctaactcactattttccacaactccaaggtatgactcataagtttaatctctatataatttgcacaattttgtatatacc 250  Q
    |||||||| | ||||||| | | | ||||| || |||||||||  | || |||||| |||| ||||||  || |||||||||||||||||||||||| ||    
T  34115 gtctatttccctagtctccgttcaatcactcttgtccacaactttatggcatgactaataattttaattcctttataatttgcacaattttgtatat-cc 34213  T
Q  251 cccatgttcttata 264  Q
     || ||||||||||    
T  34214 tccttgttcttata 34227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0073; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 176 - 264
Target Start/End: Original strand, 26816 - 26903
Alignment:
Q  176 tcactattttccacaactccaaggtatgactcataagtttaatctctatataatttgcacaattttgtatatacccccatgttcttata 264  Q
    ||||| || |||||||||  | || |||||| |||| ||||||  || |||||||||||||||||||||||| || || ||||||||||    
T  26816 tcactcttgtccacaactttatggcatgactaataattttaattcctttataatttgcacaattttgtatat-cctccttgttcttata 26903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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