View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20177_low_37 (Length: 306)
Name: NF20177_low_37
Description: NF20177
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20177_low_37 |
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Alignment Details
Target: chr6 (Bit Score: 221; Significance: 1e-121; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 13 - 279
Target Start/End: Original strand, 9646603 - 9646881
Alignment:
| Q |
13 |
aatataaaacacaaattatagaattagttaataaagttgtgacattaaagggacaaaaaa-ggtccttgtgagagaaaaatgctatagcaaataaaatt- |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
9646603 |
aatataaaacacaaattatagaattagttaataaagttgtgacattaaagggacaaaaaaaggtccttgtgagagaaaaatgctatagcaaataaaattc |
9646702 |
T |
|
| Q |
111 |
----------tgttagatattttattagactaattcaactctacaaaattgacttgtaatatatcaacttgtaatgttcgaattgtcaaagtcttataaa |
200 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
9646703 |
ataaatgatatgttagatattttattagactaattcaactctataaaattgacttgtaatatatcaacttgtaatgttagaattgtcaaagtcttataaa |
9646802 |
T |
|
| Q |
201 |
cttcattttgggtctaatttaacatggatttgagttctaaatatcctcaatactctcttcactcttaaaaacacaatat |
279 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
9646803 |
cttcattttgggtctaatttaacatggatttgagttctaaatatcctcaatactctcttcacccttaaaaacacaatat |
9646881 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 13 - 279
Target Start/End: Original strand, 9652620 - 9652898
Alignment:
| Q |
13 |
aatataaaacacaaattatagaattagttaataaagttgtgacattaaagggacaaaaaa-ggtccttgtgagagaaaaatgctatagcaaataaaatt- |
110 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
9652620 |
aatataaaacacaaattatagaattagttaataaagttgtgacattaaagggacaaaaaaaggtccttgtgagagaaaaatgctatagcaaataaaattc |
9652719 |
T |
|
| Q |
111 |
----------tgttagatattttattagactaattcaactctacaaaattgacttgtaatatatcaacttgtaatgttcgaattgtcaaagtcttataaa |
200 |
Q |
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| T |
9652720 |
ataaatgatatgttagatattttattagactaattcaactctataaaattgacttgtaatatatcaacttgtaatgttagaattgtcaaagtcttataaa |
9652819 |
T |
|
| Q |
201 |
cttcattttgggtctaatttaacatggatttgagttctaaatatcctcaatactctcttcactcttaaaaacacaatat |
279 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
9652820 |
cttcattttgggtctaatttaacatggatttgagttctaaatatcctcaatactctcttcacccttaaaaacacaatat |
9652898 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 214 - 278
Target Start/End: Original strand, 13287987 - 13288051
Alignment:
| Q |
214 |
ctaatttaacatggatttgagttctaaatatcctcaatactctcttcactcttaaaaacacaata |
278 |
Q |
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||||||||| |||||||||||||||||||||| |||||||||| || | ||||||||||||||| |
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| T |
13287987 |
ctaatttaatatggatttgagttctaaatatcgtcaatactctattttcccttaaaaacacaata |
13288051 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 214 - 251
Target Start/End: Original strand, 40740476 - 40740513
Alignment:
| Q |
214 |
ctaatttaacatggatttgagttctaaatatcctcaat |
251 |
Q |
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| T |
40740476 |
ctaatttatcatggatttgagttttaaatatcctcaat |
40740513 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 214 - 279
Target Start/End: Complemental strand, 36102064 - 36101999
Alignment:
| Q |
214 |
ctaatttaacatggatttgagttctaaatatcctcaatactctcttcactcttaaaaacacaatat |
279 |
Q |
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|||||||| ||||||||||||||||||||||| | ||||||||||| ||||||||||| ||||| |
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| T |
36102064 |
ctaatttatcatggatttgagttctaaatatctttaatactctcttttttcttaaaaacaaaatat |
36101999 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 215 - 259
Target Start/End: Original strand, 48840413 - 48840457
Alignment:
| Q |
215 |
taatttaacatggatttgagttctaaatatcctcaatactctctt |
259 |
Q |
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| T |
48840413 |
taatttatcatggatttaagttctaaatatcttcaatactctctt |
48840457 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 214 - 259
Target Start/End: Complemental strand, 21416900 - 21416855
Alignment:
| Q |
214 |
ctaatttaacatggatttgagttctaaatatcctcaatactctctt |
259 |
Q |
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|||||||| || |||||||||||||||||| |||||||||||||| |
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| T |
21416900 |
ctaatttataatcgatttgagttctaaatattctcaatactctctt |
21416855 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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