View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20177_low_38 (Length: 293)
Name: NF20177_low_38
Description: NF20177
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20177_low_38 |
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Alignment Details
Target: chr1 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 19 - 282
Target Start/End: Original strand, 20602534 - 20602798
Alignment:
| Q |
19 |
aatttcactcttaaaccctacaacccttttcaccaattcaatcttcttcttttggaatcgatttattcttcattgattctaagtttctctccctctttaa |
118 |
Q |
| |
|
||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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|
| T |
20602534 |
aatttcattcttaaaccctacaacccttttcattgattcaatcttcttcttttggaatcgatttattcttcattgattctaagtttctctccctctctaa |
20602633 |
T |
|
| Q |
119 |
ctcttgagatgtttcaatttctcttttcccaaaattgttcatctattcc-tttcaccttcaaatccaccaccctaacctcccatcactatcaaccttt-t |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||| |||| ||||||||||||||| |||| |||||||||| | |
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|
| T |
20602634 |
ctcttgagatgtttcaatttctcttttcccaaaattgttcatatattccttttcaccttcagatccgccaccctaacctcccgtcaccatcaacctttct |
20602733 |
T |
|
| Q |
217 |
ttcagctgccgtcaacctcgctgccatctctcccttattgatttctaaggttcgacatctcttcat |
282 |
Q |
| |
|
|||| ||||||||| |||||||||||||||||| ||||||| ||||| |||||||||||||||||| |
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|
| T |
20602734 |
ttca-ctgccgtcagcctcgctgccatctctcctttattgacttctagggttcgacatctcttcat |
20602798 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 178; Significance: 5e-96; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 178; E-Value: 5e-96
Query Start/End: Original strand, 19 - 282
Target Start/End: Complemental strand, 8506977 - 8506717
Alignment:
| Q |
19 |
aatttcactcttaaaccctacaacccttttcaccaattcaatcttcttcttttggaatcgatttattcttcattgattctaagtttctctccctctttaa |
118 |
Q |
| |
|
||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||| |
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|
| T |
8506977 |
aatttcattcttaaaccctacaacccttttcattgattcaatcttcttcttttggaatcgatgtattcttcattgattctaagtttctctccctctctaa |
8506878 |
T |
|
| Q |
119 |
ctcttgagatgtttcaatttctcttttcccaaaattgttcatctattcctttcaccttcaaatccaccaccctaacctcccatcactatcaacctttttt |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||| ||||||||||||||| |||| |||||||||| || |
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|
| T |
8506877 |
---ttgagatgtttcaatttctcttttcccaaaattgttcatatattcctttcaccttcagatccgccaccctaacctcccgtcaccatcaacctttctt |
8506781 |
T |
|
| Q |
219 |
cagctgccgtcaacctcgctgccatctctcccttattgatttctaaggttcgacatctcttcat |
282 |
Q |
| |
|
| |||||||||| |||||||||||||||||| |||||| ||||| |||||||||||||||||| |
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|
| T |
8506780 |
ccgctgccgtcagcctcgctgccatctctcctatattgacttctagggttcgacatctcttcat |
8506717 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 19 - 282
Target Start/End: Complemental strand, 32015499 - 32015233
Alignment:
| Q |
19 |
aatttcactcttaaaccctacaacccttttcaccaattcaatcttcttcttttggaatcgatttattcttcattgattctaagtttctctccctctttaa |
118 |
Q |
| |
|
||||||||||| |||| ||| |||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||| |
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|
| T |
32015499 |
aatttcactctcaaactctataacccttttcactaattcaatattcttcttttggaatcgatttattcttcattgattctcagtttctctccctctctaa |
32015400 |
T |
|
| Q |
119 |
ctcttgagatgtttcaatttctcttttcccaaaattgttcatctattcctttcaccttcaaatccaccaccct---aacctcccatcactatcaaccttt |
215 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||| ||| | | | |||||||| |||||||||||||| |
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|
| T |
32015399 |
ctcttgagatgtttcaatttctcttttcccaaaattgttcacgtattcccttcaccttcttctcccaaaacgtttcaacctcccgccactatcaaccttt |
32015300 |
T |
|
| Q |
216 |
tttcagctgccgtcaacctcgctgccatctctcccttattgatttctaaggttcgacatctcttcat |
282 |
Q |
| |
|
||| || || |||||||||| ||| ||||||||||||||| || || |||||||||||||||||| |
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|
| T |
32015299 |
cttccgccgctgtcaacctcgttgctgtctctcccttattgacttttagggttcgacatctcttcat |
32015233 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 19 - 179
Target Start/End: Original strand, 51647202 - 51647362
Alignment:
| Q |
19 |
aatttcactcttaaaccctacaacccttttcaccaattcaatcttcttcttttggaatcgatttattcttcattgattctaagtttctctccctctttaa |
118 |
Q |
| |
|
||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
51647202 |
aatttcattcttaaaccctacaacccttttcattaattcaatcttcttcttttggaatcaatttattcttcattgattctaagtttctctccctctctaa |
51647301 |
T |
|
| Q |
119 |
ctcttgagatgtttcaatttctcttttcccaaaattgttcatctattcctttcaccttcaa |
179 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||| |
|
|
| T |
51647302 |
ctcttgagatgtttcaatttctcttttcccaaaattgttcatatattcctttcaccatcaa |
51647362 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 201 - 282
Target Start/End: Original strand, 51647353 - 51647434
Alignment:
| Q |
201 |
tcactatcaaccttttttcagctgccgtcaacctcgctgccatctctcccttattgatttctaaggttcgacatctcttcat |
282 |
Q |
| |
|
|||| |||||||||| ||| |||| ||||| |||||||||||||||||| ||||||| ||||| |||||||||||||||||| |
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|
| T |
51647353 |
tcaccatcaacctttcttccgctgtcgtcagcctcgctgccatctctcctttattgacttctagggttcgacatctcttcat |
51647434 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 19 - 177
Target Start/End: Original strand, 23738996 - 23739157
Alignment:
| Q |
19 |
aatttcactcttaaaccctacaaccctt-ttcaccaattcaatcttcttcttttggaatcgatttattcttcattgattctaagtttctctccctcttta |
117 |
Q |
| |
|
||||| ||||| ||||| || ||||||| ||||| ||| |||||||||||||||||||| |||||||||||||||||||| | ||||| |||| | | |
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|
| T |
23738996 |
aattttactctcaaaccatataacccttcttcactgattaaatcttcttcttttggaatc-atttattcttcattgattctcaatttctttcccattcca |
23739094 |
T |
|
| Q |
118 |
actcttgagatgtttcaatttct---cttttcccaaaattgttcatctattcctttcaccttc |
177 |
Q |
| |
|
|| ||||||||||||||||||| |||| || ||||| |||||||||||||||||| |||| |
|
|
| T |
23739095 |
acgtttgagatgtttcaatttcttctctttaccaaaaatggttcatctattcctttcatcttc |
23739157 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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