View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20177_low_4 (Length: 599)
Name: NF20177_low_4
Description: NF20177
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20177_low_4 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 562; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 562; E-Value: 0
Query Start/End: Original strand, 18 - 599
Target Start/End: Complemental strand, 3085461 - 3084880
Alignment:
| Q |
18 |
gataatgccatattgtcatcacagtgtctctacaaaattgttccaaagacattgaagtatttgtgtgcttaggcaataaatttacttgtgcatttgcaat |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3085461 |
gataatgccatattgtcatcacagtgtctctacaaaattgttccaaagacattgaagtatttgtgtgcttaggcaataaatttacttgtgcatttgcaat |
3085362 |
T |
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| Q |
118 |
catgttaagtaacatagaaaatgatatgttattgtatctaaatggagcaaaagcatttgaatctattattttctcaattgtgcccatgccttgtatgcat |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3085361 |
catgttaagtaacatagaaaatgatatgttattgtatctaaatggagcaaaagcatttgaatctattattttctcaattgtgcccatgccttgtatgcat |
3085262 |
T |
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| Q |
218 |
cgttccaagtctcttgggtcctggaagtagttaaatgttaccaaagggttatcatttggatcagtgtttcggagctccaaatgacctgttgaaattggac |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3085261 |
cgttccaagtctcttgggtcctggaagtagttaaatgttaccaaagggttatcatttggatcagtgtttcggagctccaaatgacctgttgaaattggac |
3085162 |
T |
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| Q |
318 |
ctattactttctccagaatgaatccaccccttaaagcttcttggtctaggctttctatcctccctattgcttttgctatgccttgtagagtcatttgctt |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||| |
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| T |
3085161 |
ctattactttctccagaatgaatccaccccttaaagcttcttggtctaggctttctatcctccctattgcttttgctatggcttgtagaatcatttgctt |
3085062 |
T |
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| Q |
418 |
tggtggcaactttgagaattgaccaatctgcatttgtaatatttgtgagtaaattaaaaataattttgtttcatcaaacattatacttataaaaatagga |
517 |
Q |
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| T |
3085061 |
tggtggcaactttgagaattgaccaatctgcatttgtaatatttgtgagtaaattaaaaataattttgtttcatcaaacattatacttataaaaatagga |
3084962 |
T |
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| Q |
518 |
atgtagattctggtatatggtaggatcttgtattcatgtattcgtgacattggtagttgtatgatgattttgatcagatgct |
599 |
Q |
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| T |
3084961 |
atgtagattctggtatatgatacgatcttgtattcatgtattcgtgacgttggtagttgtatgatgattttgatcagatgct |
3084880 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 18 - 480
Target Start/End: Complemental strand, 3094307 - 3093845
Alignment:
| Q |
18 |
gataatgccatattgtcatcacagtgtctctacaaaattgttccaaagacattgaagtatttgtgtgcttaggcaataaatttacttgtgcatttgcaat |
117 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||| |||||| | |
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| T |
3094307 |
gataatgccatatagtcatcacagtgtctctacaaaattgttccaaagacattgaagtatttgtgtgtttaggcaataaatttactggtgaatttgctgt |
3094208 |
T |
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| Q |
118 |
catgttaagtaacatagaaaatgatatgttattgtatctaaatggagcaaaagcatttgaatctattattttctcaattgtgcccatgccttgtatgcat |
217 |
Q |
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||||||||||| |||||||| ||| ||||| ||||| ||||||||| ||| || ||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
3094207 |
catgttaagtagcatagaaactgacatgtttgtgtatttaaatggagaaaatgcctttgaatctattattttctcaattgtgttcatgccttgtatgcat |
3094108 |
T |
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| Q |
218 |
cgttccaagtctcttgggtcctggaagtagttaaatgttaccaaagggttatcatttggatcagtgtttcggagctccaaatgacctgttgaaattggac |
317 |
Q |
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| ||| |||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| ||||||||||| | |
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| T |
3094107 |
ctttctaagtctcttgggtcttggaagtagttaaatgttaccaaagggttctcatttggatcggtgtttcggagctccaaatgacccgttgaaattggcc |
3094008 |
T |
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| Q |
318 |
ctattactttctccagaatgaatccaccccttaaagcttcttggtctaggctttctatcctccctattgcttttgctatgccttgtagagtcatttgctt |
417 |
Q |
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| | | ||| || ||||||||||||||||| || ||||||||||| ||||| || |||||| ||||||||||||||||| ||| | | ||| ||||||| |
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| T |
3094007 |
ccaagattttttctagaatgaatccacccctgaatgcttcttggtccaggctctccatcctctctattgcttttgctatggcttctggggtcctttgctt |
3093908 |
T |
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| Q |
418 |
tggtggcaactttgagaattgaccaatctgcatttgtaatatttgtgagtaaattaaaaataa |
480 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
3093907 |
tggtggcaactttgagaattgaccaatctgcatttgtaatatttgtgagcaaattaaaaataa |
3093845 |
T |
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