View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20177_low_40 (Length: 286)
Name: NF20177_low_40
Description: NF20177
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20177_low_40 |
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| [»] scaffold0115 (1 HSPs) |
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Alignment Details
Target: scaffold0115 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: scaffold0115
Description:
Target: scaffold0115; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 9 - 276
Target Start/End: Complemental strand, 45848 - 45581
Alignment:
| Q |
9 |
catcatcaaagagtttcatgacacacctctttcaggacactccagtctccagccaactctatccagaatggccgcatcgtttctttaaccatatgcctat |
108 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||| |||||||| |
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| T |
45848 |
catcatcaaagagtttcatgacacacctctttcaggacactccagtctccagccaactctagccagaatggccgcatcgtttctttgaccagatgcctat |
45749 |
T |
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| Q |
109 |
aaagatatcaaacactgggtccttaggtgcgaaattttccataagagtaagtacatgccaaccaaaaaacaggggttactcaaaccattaccaatccctc |
208 |
Q |
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|||||| | ||||| |||||||| |||||||||||||| || ||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
45748 |
aaagatgtgaaacattgggtcctcaggtgcgaaatttttcagaagagtaagtaaatgccaaccaagaaacaggggttactcaaaccattaccaatccctc |
45649 |
T |
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| Q |
209 |
aacaagtgtggatagatctatctatggattttataacgcacttaccaagttcctttgggtcatctgtg |
276 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45648 |
aacaagtgtggatagatctatctatggattttataacgcacttaccaagttcctttgggtcatctgtg |
45581 |
T |
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