View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20177_low_41 (Length: 286)
Name: NF20177_low_41
Description: NF20177
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20177_low_41 |
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Alignment Details
Target: chr8 (Bit Score: 171; Significance: 7e-92; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 171; E-Value: 7e-92
Query Start/End: Original strand, 4 - 247
Target Start/End: Original strand, 29801568 - 29801818
Alignment:
| Q |
4 |
aattgtagaaactaaaataagttaattgagatcaacnnnnnnntgaa----gttgtaaattaattaagcatcaagaaattagaccccaccagtggccaca |
99 |
Q |
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| T |
29801568 |
aattgtagaaactaaaattagttaattgagatcaacaaaaaaaaaaaaaatgttgtaaattaattaagcatcaagaaattagaccccaccagtggccaca |
29801667 |
T |
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| Q |
100 |
agaagaagaaaa---acaaagatggtggaaaccaaaggaagtgaacgagccatataggagacttatcttgtgagtagaaaaaactgaactagttagaact |
196 |
Q |
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| T |
29801668 |
agaagaagaaaaaaaacaaagatggtggaaaccaaaggaagtgaacgagccatataggagacttaacttgtgagaagaaaaaactgaactagttagaact |
29801767 |
T |
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| Q |
197 |
tgttgagatgagatgcaaatggagctggtttgtcttaaataggaaaataaa |
247 |
Q |
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| T |
29801768 |
tgttgagatgagatgcaaatggagctagtttgtcttaaatagggaaataaa |
29801818 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 51 - 238
Target Start/End: Original strand, 29804738 - 29804928
Alignment:
| Q |
51 |
gttgtaaattaattaagcatcaagaaattagaccccaccagtggccacaagaagaagaaaaa---caaagatggtggaaaccaaaggaagtgaacgagcc |
147 |
Q |
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| T |
29804738 |
gttgtaaattaattaagcatcaagaaattgcaccc-accagtggccacaataagaagaaaaaagacaaagatggtggaaaccaaagacactgaacgagcc |
29804836 |
T |
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| Q |
148 |
atataggagacttatcttgtgagtagaaa---aaactgaactagttagaacttgttgagatgagatgcaaatggagctggtttgtcttaaatag |
238 |
Q |
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| T |
29804837 |
atattggagacttaacttctaagaagaaaatgaaacaaaactagttggaacttgttga-atgaaatg-aaatggagctagtttgccttaaatag |
29804928 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 86 - 149
Target Start/End: Original strand, 29808997 - 29809063
Alignment:
| Q |
86 |
caccagtggccacaagaagaagaa---aaacaaagatggtggaaaccaaaggaagtgaacgagccat |
149 |
Q |
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| T |
29808997 |
caccagtggccacaagaagcagaaggaagacaaagatggtggaaaccaaaggaactgaacgagccat |
29809063 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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