View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20177_low_42 (Length: 286)
Name: NF20177_low_42
Description: NF20177
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20177_low_42 |
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Alignment Details
Target: chr3 (Bit Score: 253; Significance: 1e-141; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 15 - 267
Target Start/End: Original strand, 43814690 - 43814942
Alignment:
| Q |
15 |
aatataagaagaacccatatgttatttaattttgaaaatagcataagtttaatgttggtttgtgtttaagttttttgctatagaagataaaaataagttg |
114 |
Q |
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| T |
43814690 |
aatataagaagaacccatatgttatttaattttgaaaatagcataagtttaatgttggtttgtgtttaagttttttgctatagaagataaaaataagttg |
43814789 |
T |
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| Q |
115 |
gagcaaagatataaataaatgaattcaaaagatagactcttgcttatatgtgcatgatgaaacaataatttaaataggggccatgaaactcattgatcac |
214 |
Q |
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| T |
43814790 |
gagcaaagatataaataaatgaattcaaaagatagactcttgcttatatgtgcatgatgaaacaataatttaaataggggccatgaaactcattgatcac |
43814889 |
T |
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| Q |
215 |
tttaaatgaaaaaaggataatgatctcacaaaattatcactttaaagaaataa |
267 |
Q |
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| T |
43814890 |
tttaaatgaaaaaaggataatgatctcacaaaattatcactttaaagaaataa |
43814942 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 64 - 137
Target Start/End: Complemental strand, 29234488 - 29234416
Alignment:
| Q |
64 |
taatgttggtttgtgtttaagttttttgctatagaagataaaaataagttggagcaaagatataaataaatgaa |
137 |
Q |
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| T |
29234488 |
taatattggtttgtggttaagtttcttgttttagaagataaaaat-agtcagagcaaagatttaaataaatgaa |
29234416 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 69 - 133
Target Start/End: Complemental strand, 29341703 - 29341639
Alignment:
| Q |
69 |
ttggtttgtgtttaagttttttgctatagaagataaaaataagttggagcaaagatataaataaa |
133 |
Q |
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| T |
29341703 |
ttggttggtgtttaactttcttgctatagaaaataagaaacagttggatcaaagatataaataaa |
29341639 |
T |
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