View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20177_low_43 (Length: 285)

Name: NF20177_low_43
Description: NF20177
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20177_low_43
NF20177_low_43
[»] chr1 (3 HSPs)
chr1 (1-266)||(19225459-19225724)
chr1 (1-148)||(19219202-19219351)
chr1 (1-264)||(19221303-19221564)
[»] chr2 (5 HSPs)
chr2 (4-267)||(27589361-27589624)
chr2 (4-249)||(27717015-27717263)
chr2 (4-266)||(27595406-27595674)
chr2 (4-105)||(27724333-27724437)
chr2 (4-105)||(27735575-27735679)
[»] chr8 (3 HSPs)
chr8 (1-43)||(27230307-27230349)
chr8 (1-60)||(14681988-14682047)
chr8 (1-43)||(13472941-13472983)
[»] chr5 (2 HSPs)
chr5 (3-40)||(37408372-37408409)
chr5 (4-44)||(9764509-9764549)
[»] chr3 (1 HSPs)
chr3 (4-40)||(2703734-2703770)


Alignment Details
Target: chr1 (Bit Score: 242; Significance: 1e-134; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 1 - 266
Target Start/End: Original strand, 19225459 - 19225724
Alignment:
Q  1 tagtccatgattccttgacaccgagctcacccaaaattgatattgatatgtggaacgaagtggtctttacacaatttgagatcatagcaacatgcccatt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  19225459 tagtccatgattccttgacaccgagctcacccaaaattgatattgatatgtggaacgaagtggtctttacacaatttgagatcatagcgacatgcccatt 19225558  T
Q  101 taacacctccaagtgtctatcgacccatcctaaatcatgcaaatctacgggtatgagagtggtaacaggaatttcattgctcaagttaaatgataccaca 200  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19225559 taacacctccaagtgtctattgacccatcctaaatcatgcaaatctacaggtatgagagtggtaacaggaatttcattgctcaagttaaatgataccaca 19225658  T
Q  201 tatgattcgctgtttgtttccccccaccaatggcacactccattcaagtgaacccaaacacctacc 266  Q
    ||||||||||| |||||||||||| |||||||||||||||||||||||| ||||||||||||||||    
T  19225659 tatgattcgctatttgtttccccctaccaatggcacactccattcaagtaaacccaaacacctacc 19225724  T

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Target: chr1; HSP #2
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 1 - 148
Target Start/End: Original strand, 19219202 - 19219351
Alignment:
Q  1 tagtccatgattccttgacaccgagctcacccaaaattgatattgatatgtggaacgaagtggtctttacacaatttgagatcatagcaacatg--ccca 98  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||  ||||    
T  19219202 tagtccatgattccttgacaccgagttcacccaaaattgatattgatatgtggaacgaagtggtttttacacaatttgagatcatagcaacatgccccca 19219301  T
Q  99 tttaacacctccaagtgtctatcgacccatcctaaatcatgcaaatctac 148  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19219302 tttaacacctccaagtgtctatcgacccatcctaaatcatgcaaatctac 19219351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 1 - 264
Target Start/End: Complemental strand, 19221564 - 19221303
Alignment:
Q  1 tagtccatgattccttgacaccgagctcacccaaaattgatattgatatgtggaacgaagtggtctttacacaatttgagatcatagcaacatgcccatt 100  Q
    |||||||||||||||| ||| |||||||||||||||||||||||||||| ||| | |||||     || || |  |||| ||||||| |||||| |||||    
T  19221564 tagtccatgattccttcacatcgagctcacccaaaattgatattgatatatggtaagaagtacgggtttcatagcttgatatcatagtaacatgtccatt 19221465  T
Q  101 taacacctccaagtgtctatcgacccatcctaaatcatgcaaatctacgggtatgagagtggtaacaggaatttcattgctcaagttaaatgataccaca 200  Q
    |||||  |||||| ||||||| | ||||| ||||| ||||||||||| ||||| || |||||||| ||    |||| |||||||||||||||||||||||    
T  19221464 taacagatccaagcgtctatctatccatcttaaattatgcaaatctaagggtaagaaagtggtaatagcc--ttcagtgctcaagttaaatgataccaca 19221367  T
Q  201 tatgattcgctgtttgtttccccccaccaatggcacactccattcaagtgaacccaaacaccta 264  Q
    |||||||| || |||||| ||||||||| ||||||||| |||||||||| |||| |||||||||    
T  19221366 tatgattcactatttgttcccccccaccgatggcacaccccattcaagtaaaccaaaacaccta 19221303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 96; Significance: 4e-47; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 4 - 267
Target Start/End: Original strand, 27589361 - 27589624
Alignment:
Q  4 tccatgattccttgacaccgagctcacccaaaattgatattgatatgtggaacgaagtggtctttacacaatttgagatcatagcaacatgcccatttaa 103  Q
    |||||||||| ||||| ||| |||||||||| |||||||||||||||||||| ||||||||||||||| ||   |||||||||   ||||||||||||||    
T  27589361 tccatgattcattgaccccgggctcacccaacattgatattgatatgtggaaagaagtggtctttacataacgggagatcataattacatgcccatttaa 27589460  T
Q  104 cacctccaagtgtctatcgacccatcctaaatcatgcaaatctacgggtatgagagtggtaacaggaatttcattgctcaagttaaatgataccacatat 203  Q
    |||| |||||| |||||| ||||||  ||||| |  ||| |||  ||| ||||||| ||||||||  | |||| ||||||||||||||||||||||||||    
T  27589461 caccgccaagtctctatcaacccattttaaattaaacaattctgagggaatgagagcggtaacagacacttcagtgctcaagttaaatgataccacatat 27589560  T
Q  204 gattcgctgtttgtttccccccaccaatggcacactccattcaagtgaacccaaacacctacct 267  Q
    | |||    | ||||   ||| |||||||||||||||||| ||||||||| | |||||||||||    
T  27589561 gtttcagaatctgttattcccaaccaatggcacactccatccaagtgaactccaacacctacct 27589624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 4 - 249
Target Start/End: Original strand, 27717015 - 27717263
Alignment:
Q  4 tccatgattccttgacaccgagctcacccaaaattgatattgatatgtggaacgaag---tggtctttacacaatttgagatcatagcaacatgcccatt 100  Q
    |||||||||||||||||||  | ||||||||||| ||||||||| |||  || ||||   | |||||| || ||||||||||||||||||||||| ||||    
T  27717015 tccatgattccttgacaccaggttcacccaaaatggatattgatgtgtacaaagaagaagtagtctttgcataatttgagatcatagcaacatgctcatt 27717114  T
Q  101 taacacctccaagtgtctatcgacccatcctaaatcatgcaaatctacgggtatgagagtggtaacaggaatttcattgctcaagttaaatgataccaca 200  Q
    ||| ||  |||||| |||||  |||||   |||||||||||||||   ||||| |||||||||||| || |  ||||||||||| ||||| || ||||||    
T  27717115 taagactgccaagtatctataaacccactttaaatcatgcaaatcagagggtaagagagtggtaactggtacctcattgctcaaattaaacgacaccaca 27717214  T
Q  201 tatgattcgctgtttgtttccccccaccaatggcacactccattcaagt 249  Q
    |||| ||| |  |  ||||||||||||||||| || |||||||||||||    
T  27717215 tatgtttcacattccgtttccccccaccaatgacaaactccattcaagt 27717263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 4 - 266
Target Start/End: Original strand, 27595406 - 27595674
Alignment:
Q  4 tccatgattccttgacaccgagctcacccaaaattgatattgatatgtggaacgaagtggtctttacacaatttgagatcatagcaacatgcccatttaa 103  Q
    |||||||||| ||||| ||| |||||||||| |||||||||||||||||||| ||||||||||| ||| ||   |||||||||   ||||||||||||||    
T  27595406 tccatgattcattgaccccgggctcacccaacattgatattgatatgtggaaagaagtggtcttcacataacgggagatcataattacatgcccatttaa 27595505  T
Q  104 cacctccaagtgtctatcgacccat------cctaaatcatgcaaatctacgggtatgagagtggtaacaggaatttcattgctcaagttaaatgatacc 197  Q
    |||| |||||| |||||  ||   |       ||| ||||||||| |||  ||| |  |||||||||||||| | |||| ||||||||||||||||||||    
T  27595506 caccgccaagtctctattaacatgttgttgatctagatcatgcaattctgagggcagtagagtggtaacaggtacttcagtgctcaagttaaatgatacc 27595605  T
Q  198 acatatgattcgctgtttgtttccccccaccaatggcacactccattcaagtgaacccaaacacctacc 266  Q
    ||||||| ||| |  | |  ||  | |||||||||||||||||||| ||||||||||| | ||||||||    
T  27595606 acatatgtttcacaatcttctttgctccaccaatggcacactccatccaagtgaaccccagcacctacc 27595674  T

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Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 4 - 105
Target Start/End: Original strand, 27724333 - 27724437
Alignment:
Q  4 tccatgattccttgacaccgagctcacccaaaattgatattgatatgtggaacgaag---tggtctttacacaatttgagatcatagcaacatgcccatt 100  Q
    |||||||||||| ||||||| | || ||||||| |||||||||||||||||| ||||   |||||||| || || ||   ||||||||||||  ||||||    
T  27724333 tccatgattcctcgacaccgggttctcccaaaactgatattgatatgtggaaagaaggactggtctttgcataagttacaatcatagcaacaaacccatt 27724432  T
Q  101 taaca 105  Q
    |||||    
T  27724433 taaca 27724437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 105
Target Start/End: Original strand, 27735575 - 27735679
Alignment:
Q  4 tccatgattccttgacaccgagctcacccaaaattgatattgatatgtggaacgaag---tggtctttacacaatttgagatcatagcaacatgcccatt 100  Q
    |||||||||| ||||||||  | || ||||||| |||||||||||||||||| ||||   |||||||| || || ||  |||||||||||||   |||||    
T  27735575 tccatgattcattgacaccaggttctcccaaaactgatattgatatgtggaatgaaggactggtcttttcataagttacgatcatagcaacaaaaccatt 27735674  T
Q  101 taaca 105  Q
    |||||    
T  27735675 taaca 27735679  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 27230307 - 27230349
Alignment:
Q  1 tagtccatgattccttgacaccgagctcacccaaaattgatat 43  Q
    |||||||||||||||||||||| | ||||||||||||||||||    
T  27230307 tagtccatgattccttgacaccaatctcacccaaaattgatat 27230349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 14681988 - 14682047
Alignment:
Q  1 tagtccatgattccttgacaccgagctcacccaaaattgatattgatatgtggaacgaag 60  Q
    ||||||||||||| ||||||||| | || ||||||| ||||||||||||| |||| ||||    
T  14681988 tagtccatgattcattgacaccgggttctcccaaaactgatattgatatgcggaaagaag 14682047  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 13472941 - 13472983
Alignment:
Q  1 tagtccatgattccttgacaccgagctcacccaaaattgatat 43  Q
    ||||||||||||| ||||||||||  |||||||||||||||||    
T  13472941 tagtccatgattctttgacaccgatttcacccaaaattgatat 13472983  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 3 - 40
Target Start/End: Original strand, 37408372 - 37408409
Alignment:
Q  3 gtccatgattccttgacaccgagctcacccaaaattga 40  Q
    |||||||||||||| |||||||||||||||||||||||    
T  37408372 gtccatgattcctttacaccgagctcacccaaaattga 37408409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 4 - 44
Target Start/End: Complemental strand, 9764549 - 9764509
Alignment:
Q  4 tccatgattccttgacaccgagctcacccaaaattgatatt 44  Q
    ||||||||||||||||||| || ||||||||||||||||||    
T  9764549 tccatgattccttgacaccaagttcacccaaaattgatatt 9764509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 4 - 40
Target Start/End: Complemental strand, 2703770 - 2703734
Alignment:
Q  4 tccatgattccttgacaccgagctcacccaaaattga 40  Q
    ||||||||||||||||||| || ||||||||||||||    
T  2703770 tccatgattccttgacaccaagttcacccaaaattga 2703734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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