View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20177_low_47 (Length: 267)
Name: NF20177_low_47
Description: NF20177
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20177_low_47 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 18 - 267
Target Start/End: Original strand, 2113938 - 2114187
Alignment:
| Q |
18 |
agtgcagaaggactaattccaagttctgataacaatgaaccaaccaccatcaaaccaaaactcaacctaccaagtttctcatagaacttttcaaggaaat |
117 |
Q |
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| T |
2113938 |
agtgcagaaggactaattccaagttctgataacaatgaaccaaccaccatcaaaccaaaactcaacctaccaagtttctcatagaacttttcaaggaaat |
2114037 |
T |
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| Q |
118 |
ttacctcatcagttgaatactcttttctttttcttcctcttatcaaaatcattgcatcagataatggcaatggaggaaggtgaatggtatcatagttctt |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
2114038 |
ttacctcatcagttgaatactcttttctttttcttcctcttatcaaaatcattgcatcagataatggcaatggaggaaggtgaatggtatcatagttttt |
2114137 |
T |
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| Q |
218 |
taccttggaaagccttgtagtaataataacatgagtccctcctgtgttgt |
267 |
Q |
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| T |
2114138 |
taccttggatagccttgtagtaataataacatgagtccctcctgtgttgt |
2114187 |
T |
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