View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20177_low_48 (Length: 264)

Name: NF20177_low_48
Description: NF20177
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20177_low_48
NF20177_low_48
[»] chr2 (1 HSPs)
chr2 (114-246)||(28658692-28658835)
[»] scaffold0576 (1 HSPs)
scaffold0576 (113-246)||(4596-4740)
[»] chr7 (1 HSPs)
chr7 (113-246)||(2751806-2751950)
[»] chr6 (1 HSPs)
chr6 (113-246)||(15359612-15359756)
[»] chr8 (1 HSPs)
chr8 (114-246)||(3734145-3734288)
[»] chr1 (2 HSPs)
chr1 (114-246)||(20264860-20265003)
chr1 (17-118)||(34726150-34726251)
[»] scaffold0002 (1 HSPs)
scaffold0002 (157-240)||(288709-288792)
[»] chr4 (2 HSPs)
chr4 (157-240)||(18199005-18199088)
chr4 (113-142)||(18203816-18203845)


Alignment Details
Target: chr2 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 114 - 246
Target Start/End: Complemental strand, 28658835 - 28658692
Alignment:
Q  114 tgtccttaaatttgacaagtttgaatcaaaaaatta---------ggacctcaagcaatgtgtttttgtttttaataataacta--actataatttagag 202  Q
    ||||||||||||||||||||||||||||| ||||||         ||| ||||||||||||||||||||||||||||  |||||  |||||||||||||     
T  28658835 tgtccttaaatttgacaagtttgaatcaataaattaatcaatcaaggatctcaagcaatgtgtttttgtttttaatatgaactataactataatttagac 28658736  T
Q  203 aaaaccatatctctcaaatcaatattagaaaccaaaatctgaat 246  Q
    ||||||| ||||| |||| ||||||||||||||||||| |||||    
T  28658735 aaaaccagatctcacaaaccaatattagaaaccaaaatttgaat 28658692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0576 (Bit Score: 62; Significance: 7e-27; HSPs: 1)
Name: scaffold0576
Description:

Target: scaffold0576; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 113 - 246
Target Start/End: Complemental strand, 4740 - 4596
Alignment:
Q  113 ctgtccttaaatttgacaagtttgaatcaaaaaatta---------ggacctcaagcaatgtgtttttgtttttaataataacta--actataatttaga 201  Q
    |||||||||||||||||||||||||||||| ||||||         ||| |||||||||||||||||||| |||||||  |||||  |||||||||||||    
T  4740 ctgtccttaaatttgacaagtttgaatcaataaattaatcaatcaaggatctcaagcaatgtgtttttgtctttaatatgaactataactataatttaga 4641  T
Q  202 gaaaaccatatctctcaaatcaatattagaaaccaaaatctgaat 246  Q
     ||||||| ||||| |||| ||||||||||||||||||| |||||    
T  4640 caaaaccagatctcacaaaccaatattagaaaccaaaatttgaat 4596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 62; Significance: 7e-27; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 113 - 246
Target Start/End: Original strand, 2751806 - 2751950
Alignment:
Q  113 ctgtccttaaatttgacaagtttgaatcaaaaaatta---------ggacctcaagcaatgtgtttttgtttttaataataacta--actataatttaga 201  Q
    |||||||||||||||||||||||||||||| ||||||         ||| |||||||||||||||||||| |||||||  |||||  |||||||||||||    
T  2751806 ctgtccttaaatttgacaagtttgaatcaataaattaatcaatcaaggatctcaagcaatgtgtttttgtctttaatatgaactataactataatttaga 2751905  T
Q  202 gaaaaccatatctctcaaatcaatattagaaaccaaaatctgaat 246  Q
     ||||||| ||||| |||| ||||||||||||||||||| |||||    
T  2751906 caaaaccagatctcacaaaccaatattagaaaccaaaatttgaat 2751950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 62; Significance: 7e-27; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 113 - 246
Target Start/End: Complemental strand, 15359756 - 15359612
Alignment:
Q  113 ctgtccttaaatttgacaagtttgaatcaaaaaatta---------ggacctcaagcaatgtgtttttgtttttaataataacta--actataatttaga 201  Q
    |||||||||||||||||||||||||||||| ||||||         ||| |||||||||||||||||||| |||||||  |||||  |||||||||||||    
T  15359756 ctgtccttaaatttgacaagtttgaatcaataaattaatcaatcaaggatctcaagcaatgtgtttttgtctttaatatgaactataactataatttaga 15359657  T
Q  202 gaaaaccatatctctcaaatcaatattagaaaccaaaatctgaat 246  Q
     ||||||| ||||| |||| ||||||||||||||||||| |||||    
T  15359656 caaaaccagatctcacaaaccaatattagaaaccaaaatttgaat 15359612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 114 - 246
Target Start/End: Complemental strand, 3734288 - 3734145
Alignment:
Q  114 tgtccttaaatttgacaagtttgaatcaaaaaatta---------ggacctcaagcaatgtgtttttgtttttaataataacta--actataatttagag 202  Q
    ||||||||||||||||||||||||||||| ||||||         ||| |||||||||||||||||||| |||||||  |||||  |||||||||||||     
T  3734288 tgtccttaaatttgacaagtttgaatcaataaattaatcaatcaaggatctcaagcaatgtgtttttgtatttaatatgaactataactataatttagac 3734189  T
Q  203 aaaaccatatctctcaaatcaatattagaaaccaaaatctgaat 246  Q
    ||||||| ||||| |||| ||||||||||||||||||| |||||    
T  3734188 aaaaccagatctcacaaaccaatattagaaaccaaaatttgaat 3734145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 61; Significance: 3e-26; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 114 - 246
Target Start/End: Complemental strand, 20265003 - 20264860
Alignment:
Q  114 tgtccttaaatttgacaagtttgaatcaaaaaatta---------ggacctcaagcaatgtgtttttgtttttaataataacta--actataatttagag 202  Q
    |||||||||||||||| |||||||||||| ||||||         ||| ||||||||||||||||||||||||||||  |||||  |||||||||||||     
T  20265003 tgtccttaaatttgactagtttgaatcaataaattaatcaatcaaggatctcaagcaatgtgtttttgtttttaatatgaactataactataatttagac 20264904  T
Q  203 aaaaccatatctctcaaatcaatattagaaaccaaaatctgaat 246  Q
    ||||||| ||||| |||| ||||||||||||||||||| |||||    
T  20264903 aaaaccagatctcacaaaccaatattagaaaccaaaatttgaat 20264860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 17 - 118
Target Start/End: Original strand, 34726150 - 34726251
Alignment:
Q  17 acaatgaaaattcaaaatagaaaggtttcagaagattgattcatttcaagccgagcaaagagagaatttcataggtgaataattgaccgagtgttgctgt 116  Q
    |||||||||| |||||||||||||||| |||||| ||||||||| |||| ||| ||||||||||||||||| | |||| | | |||| || |||||||||    
T  34726150 acaatgaaaagtcaaaatagaaaggttacagaaggttgattcatatcaaaccgggcaaagagagaatttcagacgtgatttagtgactgaatgttgctgt 34726249  T
Q  117 cc 118  Q
    ||    
T  34726250 cc 34726251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 157 - 240
Target Start/End: Original strand, 288709 - 288792
Alignment:
Q  157 aagcaatgtgtttttgtttttaataataactaactataatttagagaaaaccatatctctcaaatcaatattagaaaccaaaat 240  Q
    |||||||||||||| ||||||||||  |||||| ||||||||| | ||||||| ||||||||||||||||||||||||||||||    
T  288709 aagcaatgtgttttagtttttaatatgaactaagtataatttaaaaaaaaccagatctctcaaatcaatattagaaaccaaaat 288792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 56; Significance: 3e-23; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 157 - 240
Target Start/End: Complemental strand, 18199088 - 18199005
Alignment:
Q  157 aagcaatgtgtttttgtttttaataataactaactataatttagagaaaaccatatctctcaaatcaatattagaaaccaaaat 240  Q
    |||||||||||||| ||||||||||  |||||| ||||||||| | ||||||| ||||||||||||||||||||||||||||||    
T  18199088 aagcaatgtgttttagtttttaatatgaactaagtataatttaaaaaaaaccagatctctcaaatcaatattagaaaccaaaat 18199005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 113 - 142
Target Start/End: Complemental strand, 18203845 - 18203816
Alignment:
Q  113 ctgtccttaaatttgacaagtttgaatcaa 142  Q
    ||||||||||||||||||||||||||||||    
T  18203845 ctgtccttaaatttgacaagtttgaatcaa 18203816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University