View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20177_low_5 (Length: 588)
Name: NF20177_low_5
Description: NF20177
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20177_low_5 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 544; Significance: 0; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 544; E-Value: 0
Query Start/End: Original strand, 15 - 574
Target Start/End: Complemental strand, 418499 - 417940
Alignment:
| Q |
15 |
attattcttcttggtatcatttccattagcgagtttgttctggtcatcttctcccttaagttcagcaacaggttgccccatttgacctctgaaacaattt |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
418499 |
attattcttcttggtatcatttccattagcgagtttgttctggtcatcttctcccttaagttcagcaacaggttgccccatttgacctctgaaacaattt |
418400 |
T |
|
| Q |
115 |
catacaacacaatttaataatcctcacttagaagcaaaatttaattaattaaaaattcatccacaacattgtttgcacaaaaattaattcccatgtaaca |
214 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
418399 |
catacaacacaatttaataatcctcacttagaagcaaaatttaattaattaaaaattcatccacaacattgtttgcacaaaaactaattcccatgtaaca |
418300 |
T |
|
| Q |
215 |
aacaaaatggagactcagttttaggataaaagttgtaagatacataacataatgcaacccatactagaaggatgccaaacactccttaaatcaactaatg |
314 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
418299 |
aacaaaatggagactcagttttaggataaaagttgtaagatacataacataatgcaacccatactagaaggatgccaaacattccttaaatcaactaatg |
418200 |
T |
|
| Q |
315 |
tatatatcaatgcagatttttataatagtggaaagagcggaagtaagtgtgtggagtggctaaatgcaaagatcaaaggttttggatgtgaccttacaca |
414 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
418199 |
tatatatcaatgcagatttttataatagtggaaagagcagaagtaagtgtgtggagtggctaaatgcaaagatcaaaggttttggatgtgaccttacaca |
418100 |
T |
|
| Q |
415 |
atggtgtgataatcctttgatttgcatggggttgaatggcggtgggtaagttgtaaaagtgtttgtaccttactgtacgagtgtgaagcaggttgacaag |
514 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
418099 |
atggtgtgataatcctttgatttgcatggggttgaatggcggtgggtaagttgtaaaagtgtttgtaccttactgtacgagtgtgaagcaggttgacaag |
418000 |
T |
|
| Q |
515 |
agaatagggcatacccaggaacatcatatagagtgaaggtgaatttggactggagtagtg |
574 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
417999 |
agaatagggcatacccaggaacatcatatagagtgaaggtgaatttggaccggagtagtg |
417940 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 52 - 121
Target Start/End: Complemental strand, 406143 - 406074
Alignment:
| Q |
52 |
ttctggtcatcttctcccttaagttcagcaacaggttgccccatttgacctctgaaacaatttcatacaa |
121 |
Q |
| |
|
|||| ||||| ||||||||||| |||||||| |||| |||||||||| |||||||||||||||||||||| |
|
|
| T |
406143 |
ttctcgtcattttctcccttaacttcagcaataggtggccccatttggcctctgaaacaatttcatacaa |
406074 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 212 - 260
Target Start/End: Complemental strand, 645757 - 645709
Alignment:
| Q |
212 |
acaaacaaaatggagactcagttttaggataaaagttgtaagatacata |
260 |
Q |
| |
|
||||||||||| |||| |||||||| | |||||||||||||| |||||| |
|
|
| T |
645757 |
acaaacaaaatagagattcagtttttgcataaaagttgtaaggtacata |
645709 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University