View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20177_low_50 (Length: 261)
Name: NF20177_low_50
Description: NF20177
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20177_low_50 |
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Alignment Details
Target: chr2 (Bit Score: 90; Significance: 1e-43; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 56 - 183
Target Start/End: Complemental strand, 4922963 - 4922841
Alignment:
| Q |
56 |
cataaattcgaaagacacaaacacatactttgaaagagacacacacaaagagcataaatttgcaagacaactatatgaatatgatctagttagttagacc |
155 |
Q |
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| T |
4922963 |
cataaattcgaaagacacaaacacatactttgaaagagacacactcaaagagcataaatttgcaagacaactat------atgatctagttagttagacc |
4922870 |
T |
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| Q |
156 |
aaagacca-ttaagtccgtattaacatca |
183 |
Q |
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|||||||| ||| |||||||||||||||| |
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| T |
4922869 |
aaagaccatttatgtccgtattaacatca |
4922841 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 180 - 245
Target Start/End: Complemental strand, 4922799 - 4922734
Alignment:
| Q |
180 |
atcactttccatgccatatttcacgttgctatccaaaccttggacctcagcaccattgcccatatt |
245 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4922799 |
atcactttccatgccatatttcacgttgctatccaaaccttggacctcagcaccattgcccatatt |
4922734 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 31 - 63
Target Start/End: Complemental strand, 4923006 - 4922974
Alignment:
| Q |
31 |
gacacaaacacatactcccaatgagcataaatt |
63 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
4923006 |
gacacaaacacatactcccaatgagcataaatt |
4922974 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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