View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20177_low_52 (Length: 257)
Name: NF20177_low_52
Description: NF20177
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20177_low_52 |
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Alignment Details
Target: chr3 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 16 - 252
Target Start/End: Complemental strand, 42485241 - 42485005
Alignment:
| Q |
16 |
caatttcaaaactagactatacatgctgctttcacatggccatagatcacccaagtcactcaaaatgcaatttatcatgacacattcttaactacagaca |
115 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42485241 |
caatttcaaaactagactatacatgctgctttcacatggccatagatcatccaagtcactcaaaatgcaatttatcatgacacattcttaactacagaca |
42485142 |
T |
|
| Q |
116 |
gaaatagttttggaatttaccccaaaatcaaaattttaactaggcttcttgtgtgccatttccatctacacaccattcaaacaggtaccagtaacattaa |
215 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42485141 |
gaaatagttttagaatttaccccaaaatcaaaattttaactaggcttcttgtgtgccatttccatctacacaccattcaaacaggtaccagtaacattaa |
42485042 |
T |
|
| Q |
216 |
acatttgttagtacataaccaatgagcctatgcttct |
252 |
Q |
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||||||||||||||||||||||||||||||| ||||| |
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| T |
42485041 |
acatttgttagtacataaccaatgagcctattcttct |
42485005 |
T |
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