View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20177_low_55 (Length: 248)
Name: NF20177_low_55
Description: NF20177
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20177_low_55 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 248
Target Start/End: Original strand, 43716128 - 43716370
Alignment:
| Q |
1 |
aagaagaagctagaaaaaataataacaagttaacaatcatttacaatcaccagatcccactcctgcaggtggtggctcaattaatgataattattcaaag |
100 |
Q |
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| T |
43716128 |
aagaagaagctagaaaaaataataacaaattaacaatcatttacaatcaccagatcccactcctgcaggtggtggctcaattaatgataataattcaaag |
43716227 |
T |
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| Q |
101 |
atcacatcacatacagaggaaatcatattccacaaactctgttgataccctttgaaatataataattgtccaaagaaaccagaatatctgcagaataaac |
200 |
Q |
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| T |
43716228 |
atca-----catacagaggaaatcatattccacaaactctgttgataccctttgaaatataataattgtccaaagaaaccagaatatctgcagaataaac |
43716322 |
T |
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| Q |
201 |
taatcgagtaaacatgtagaaaatatataaagacttatattaacttag |
248 |
Q |
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| T |
43716323 |
taatcgagtaaacatgtagaaaatatataaagacttatattaacttag |
43716370 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 72; Significance: 7e-33; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 1 - 147
Target Start/End: Complemental strand, 52891490 - 52891346
Alignment:
| Q |
1 |
aagaagaagctagaaaaaataataacaagttaacaatcatttacaatcaccagatcccactcctg------caggtggtggctcaattaatgataattat |
94 |
Q |
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| T |
52891490 |
aagaagaagctagaaaaaataataa---gttaacaatcatttacaatcaccagatcccattccagtcctagcaggtggtggccaaattaatgataataat |
52891394 |
T |
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| Q |
95 |
tcaaagatcacatcacatacagaggaaatcatattccacaaactctgttgata |
147 |
Q |
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| T |
52891393 |
tcaaagatcactt-----acagaggaaatcatattccacaaactctgttgata |
52891346 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 162 - 224
Target Start/End: Complemental strand, 52891300 - 52891238
Alignment:
| Q |
162 |
ataattgtccaaagaaaccagaatatctgcagaataaactaatcgagtaaacatgtagaaaat |
224 |
Q |
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| T |
52891300 |
ataattgtccaaaggaaccataatatctgcagaataaactaatcaagtaaatatgtagaaaat |
52891238 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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