View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20177_low_57 (Length: 241)

Name: NF20177_low_57
Description: NF20177
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20177_low_57
NF20177_low_57
[»] chr6 (2 HSPs)
chr6 (113-224)||(14208334-14208445)
chr6 (12-86)||(14208233-14208307)
[»] chr7 (2 HSPs)
chr7 (113-223)||(42302725-42302841)
chr7 (12-82)||(42302624-42302694)
[»] chr5 (2 HSPs)
chr5 (113-223)||(2368951-2369067)
chr5 (12-86)||(2368844-2368918)


Alignment Details
Target: chr6 (Bit Score: 88; Significance: 2e-42; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 113 - 224
Target Start/End: Original strand, 14208334 - 14208445
Alignment:
Q  113 tcaagagccgtgtttaatctcttctcaatcccttgcataatggtgttagaggattgaaacttaaataaaagggttcattgaagaatttaacaggacttgg 212  Q
    ||||||||| ||||| |||| |||||||| ||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||    
T  14208334 tcaagagccctgttttatctattctcaataccttgcataatggtgttagagaattgaaacttaaataaaaggattcattgaagaatttaacaggacttgg 14208433  T
Q  213 acacaatttcat 224  Q
    ||||||||||||    
T  14208434 acacaatttcat 14208445  T

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Target: chr6; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 12 - 86
Target Start/End: Original strand, 14208233 - 14208307
Alignment:
Q  12 agagagcgattccagggaagttggcaacggagagtagtttgtcagtacaacctttcgggacggagtatatcctac 86  Q
    ||||||||||||||| ||||||||||||| ||||||||||||| |||| ||||||||||||||||||||||||||    
T  14208233 agagagcgattccagtgaagttggcaacgaagagtagtttgtcggtactacctttcgggacggagtatatcctac 14208307  T

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Target: chr7 (Bit Score: 74; Significance: 5e-34; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 113 - 223
Target Start/End: Original strand, 42302725 - 42302841
Alignment:
Q  113 tcaagagccgtgtttaatctcttctcaatcccttgcataatggtgttagaggattga------aacttaaataaaagggttcattgaagaatttaacagg 206  Q
    ||||||||| ||||| ||||||||||||||||||||||||||||||||||| |||||      ||||||||||||||| |||||||||||||||||||||    
T  42302725 tcaagagccttgttttatctcttctcaatcccttgcataatggtgttagagaattgaattaacaacttaaataaaaggattcattgaagaatttaacagg 42302824  T
Q  207 acttggacacaatttca 223  Q
    ||||||| |||||||||    
T  42302825 acttggagacaatttca 42302841  T

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Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 12 - 82
Target Start/End: Original strand, 42302624 - 42302694
Alignment:
Q  12 agagagcgattccagggaagttggcaacggagagtagtttgtcagtacaacctttcgggacggagtatatc 82  Q
    ||||||||||||| | |||||||||| | ||||||||||||| ||||| ||||||| | ||||||||||||    
T  42302624 agagagcgattccggtgaagttggcagcagagagtagtttgttagtactacctttcagaacggagtatatc 42302694  T

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Target: chr5 (Bit Score: 70; Significance: 1e-31; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 113 - 223
Target Start/End: Original strand, 2368951 - 2369067
Alignment:
Q  113 tcaagagccgtgtttaatctcttctcaatcccttgcataatggtgttagaggattga------aacttaaataaaagggttcattgaagaatttaacagg 206  Q
    ||||||||| ||||| ||||||||||||||||||||||||||||||||||| |||||      ||||||||||||||| ||||||||||||||||||| |    
T  2368951 tcaagagccctgttttatctcttctcaatcccttgcataatggtgttagagaattgaattcacaacttaaataaaaggattcattgaagaatttaacaag 2369050  T
Q  207 acttggacacaatttca 223  Q
    ||||||| |||||||||    
T  2369051 acttggagacaatttca 2369067  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 12 - 86
Target Start/End: Original strand, 2368844 - 2368918
Alignment:
Q  12 agagagcgattccagggaagttggcaacggagagtagtttgtcagtacaacctttcgggacggagtatatcctac 86  Q
    |||||||||||||   |||||||| |   ||||||||||||| ||||| ||||||||| ||||||||||||||||    
T  2368844 agagagcgattccgatgaagttggaagtagagagtagtttgttagtactacctttcggaacggagtatatcctac 2368918  T

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