View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20177_low_58 (Length: 240)
Name: NF20177_low_58
Description: NF20177
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20177_low_58 |
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Alignment Details
Target: chr1 (Bit Score: 204; Significance: 1e-111; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 19225457 - 19225230
Alignment:
| Q |
1 |
gctcttcgatgttggacccttatctgacatcaagcatcctatcgatcttatcggagcatggaagaagggtgatatacttttcagaaatgatgataatgaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19225457 |
gctcttcgatgttggacccttatctgacatcaagcatcctatcgatcttatcggagcatggaagaagggtgatatacttttcagaaatgatgataatgaa |
19225358 |
T |
|
| Q |
101 |
ttagcttgccttgatttaactactggagcaattaagaaaattggtgttaaaacaagttctcaggtaataacttatacaaaaacattcttatgattggagg |
200 |
Q |
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||| |||||||||||||||||||||||||||| |||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
19225357 |
ttattttgccttgatttaactactggagcaattgagaaaactggtgttaaaacaggttctcaggtaataacttatacaaaaacattcttatgattgaagg |
19225258 |
T |
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| Q |
201 |
aataaataaatatttgttttgtggccta |
228 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
19225257 |
aataaataaatatttgttttgtggccta |
19225230 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 19219200 - 19218973
Alignment:
| Q |
1 |
gctcttcgatgttggacccttatctgacatcaagcatcctatcgatcttatcggagcatggaagaagggtgatatacttttcagaaatgatgataatgaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
19219200 |
gctcttcgatgttggacccttatctgacatcaagcatcctatcgatcttatcggagcatggaagaagggtgatatacttttcagaaatgatgataaagaa |
19219101 |
T |
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| Q |
101 |
ttagcttgccttgatttaactactggagcaattaagaaaattggtgttaaaacaagttctcaggtaataacttatacaaaaacattcttatgattggagg |
200 |
Q |
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| T |
19219100 |
ttaatttgccttgatttaactactggagcaattaagaaaaatggtgttaaaacaggttctaaggtaataacttatacaaaaacattcttatgattgaagg |
19219001 |
T |
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| Q |
201 |
aataaataaatatttgttttgtggccta |
228 |
Q |
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| T |
19219000 |
aataaataaatatttgttttgtggccta |
19218973 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 53 - 153
Target Start/End: Complemental strand, 14681943 - 14681843
Alignment:
| Q |
53 |
ggagcatggaagaagggtgatatacttttcagaaatgatgataatgaattagcttgccttgatttaactactggagcaattaagaaaattggtgttaaaa |
152 |
Q |
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|||||| ||||||||| ||||||| |||| ||||| ||||| |||| | ||||| ||||||||||||||| ||| |||| |||| ||||||||||||| |
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| T |
14681943 |
ggagcagggaagaaggttgatatagttttgagaaaatatgatggtgaacttgcttgtcttgatttaactacttgagtaattgagaacattggtgttaaaa |
14681844 |
T |
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| Q |
153 |
c |
153 |
Q |
| |
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| T |
14681843 |
c |
14681843 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000001; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 151
Target Start/End: Complemental strand, 27589356 - 27589215
Alignment:
| Q |
1 |
gctcttcgatgttggacccttatctgacatcaagcatcctatcgatcttatcggagcatggaagaagggtgatatacttttcagaaatgatgataatgaa |
100 |
Q |
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|||||||||||||||||||||||||||||| |||| | | |||| |||||| || |||||||||||||| |||| | ||| |||||| ||||| |
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| T |
27589356 |
gctcttcgatgttggacccttatctgacattaagc--------ggt-ttattggagcaggggagaagggtgatatattttttaaaaaagatgatgatgaa |
27589266 |
T |
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| Q |
101 |
ttagcttgccttgatttaactactggagcaattaagaaaattggtgttaaa |
151 |
Q |
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|||| | |||||||| ||||| |||| |||| |||| |||||||||||| |
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| T |
27589265 |
ctagcctatcttgatttgactaccggagtaattcagaacattggtgttaaa |
27589215 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 49 - 146
Target Start/End: Complemental strand, 27735531 - 27735434
Alignment:
| Q |
49 |
tatcggagcatggaagaagggtgatatacttttcagaaatgatgataatgaattagcttgccttgatttaactactggagcaattaagaaaattggtg |
146 |
Q |
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||||||| || ||||||||||||||||| |||| ||||| |||||| |||| | ||||| |||||||||||||| |||| ||| |||| ||||||| |
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| T |
27735531 |
tatcggaacagggaagaagggtgatatatttttgagaaaagatgatggtgaacttgcttgtcttgatttaactaccggagtaatggagaacattggtg |
27735434 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 49 - 128
Target Start/End: Complemental strand, 27724289 - 27724210
Alignment:
| Q |
49 |
tatcggagcatggaagaagggtgatatacttttcagaaatgatgataatgaattagcttgccttgatttaactactggag |
128 |
Q |
| |
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|||||||||| ||||||||||||||||| |||| ||||| |||||| |||| | ||||| |||||||||| ||||||| |
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| T |
27724289 |
tatcggagcagggaagaagggtgatatatttttgagaaaagatgatggtgaacttgcttgtcttgatttaagcactggag |
27724210 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 30
Target Start/End: Complemental strand, 27595401 - 27595372
Alignment:
| Q |
1 |
gctcttcgatgttggacccttatctgacat |
30 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
27595401 |
gctcttcgatgttggacccttatctgacat |
27595372 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 87 - 128
Target Start/End: Complemental strand, 27716930 - 27716889
Alignment:
| Q |
87 |
atgatgataatgaattagcttgccttgatttaactactggag |
128 |
Q |
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|||||||||||||| ||||||| |||||||||||||| |||| |
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| T |
27716930 |
atgatgataatgaactagcttgtcttgatttaactaccggag |
27716889 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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