View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20177_low_64 (Length: 222)
Name: NF20177_low_64
Description: NF20177
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20177_low_64 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 149; Significance: 7e-79; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 149; E-Value: 7e-79
Query Start/End: Original strand, 56 - 222
Target Start/End: Complemental strand, 43716544 - 43716379
Alignment:
| Q |
56 |
ttcatctcaacttatcttcttcgccttacaaaagttcattacttttcaacttctttttatatgttaataacatag-aaagctagagatgaatcagtgtct |
154 |
Q |
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| T |
43716544 |
ttcatctcaacttatcttcttcgccttacaaaagttcattacttttcaacttctttttatatgttaataacatagaaaagctagagatgaatcagtgtct |
43716445 |
T |
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| Q |
155 |
cccagtaaacctgaagataagtctttattcaaaaacatggaatatctttcaaatattttcctggttgc |
222 |
Q |
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| T |
43716444 |
cccagtaaacctgaagataagtc--tattcaaaaacatggaatatctttcaaatattttcctggttgc |
43716379 |
T |
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Target: chr1 (Bit Score: 51; Significance: 2e-20; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 148
Target Start/End: Original strand, 52887296 - 52887439
Alignment:
| Q |
1 |
agattgggctatttatttctttccaagtatggctctcaaatacatctgactacaattcatctcaacttatcttcttcgccttacaaaagttcattacttt |
100 |
Q |
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| T |
52887296 |
agattgggctattgatttcttttcaagtatggctctcaactacatttgattgcaatt-atctcaactta---tctttgccttccaaaagttcagtac-tt |
52887390 |
T |
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| Q |
101 |
tcaacttc-tttttatatgttaataacatagaaagctagagatgaatca |
148 |
Q |
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| T |
52887391 |
tggacttcttttttacttgttaataacttagacagctagagatgaatca |
52887439 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 180 - 222
Target Start/End: Original strand, 52890957 - 52890999
Alignment:
| Q |
180 |
tattcaaaaacatggaatatctttcaaatattttcctggttgc |
222 |
Q |
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| T |
52890957 |
tattcaaaaacatggaatatctgtcaaatattttcctggttgc |
52890999 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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