View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20177_low_65 (Length: 219)
Name: NF20177_low_65
Description: NF20177
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20177_low_65 |
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Alignment Details
Target: chr1 (Bit Score: 163; Significance: 3e-87; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 16 - 202
Target Start/End: Original strand, 9486771 - 9486956
Alignment:
| Q |
16 |
aatatggtgtgaatttgttactatagatgctaaaatataagtattgcatatgcattatgcaagaataacacatatttccttgaagtggtatggaacctag |
115 |
Q |
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| T |
9486771 |
aatatggtgtgaatttgttagtatagatgctaaaatataagtattgcatatgcattatgcaagaataacacatatttccttgaagtggtatggaacctag |
9486870 |
T |
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| Q |
116 |
ctaatcatgtaatttgtccaatctaaatattcttcatctagctcccactttttctaggtagagctcttaaggagttaactattttaa |
202 |
Q |
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| T |
9486871 |
ctaatcatttaatttgtccaatctgaatattcttcatctagctccca-tttttccaggtagagctcttaaggagttaactattttaa |
9486956 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 63 - 202
Target Start/End: Original strand, 9455062 - 9455192
Alignment:
| Q |
63 |
atatgcattatgcaagaataacacatatttccttgaagtggtatggaacctagctaatcatgtaatttgtccaatctaaatattcttcatctagctccca |
162 |
Q |
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| T |
9455062 |
atatgcaatatgtaaaaataacacatatttccttgaagtggtatggaac----ctaatc-----agttgtccaatctgtatatttttcatctagctccca |
9455152 |
T |
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| Q |
163 |
ctttttctaggtagagctcttaaggagttaa-ctattttaa |
202 |
Q |
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| T |
9455153 |
-tttttctagttagagctgtttagaagttaatctattttaa |
9455192 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 25 - 74
Target Start/End: Original strand, 9434022 - 9434071
Alignment:
| Q |
25 |
tgaatttgttactatagatgctaaaatataagtattgcatatgcattatg |
74 |
Q |
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| T |
9434022 |
tgaatttgttagtatagttactaaaatataagtattgcatatgcattatg |
9434071 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 127 - 202
Target Start/End: Original strand, 9434114 - 9434188
Alignment:
| Q |
127 |
atttgtccaatctaaatattcttcatctagctcccactttttctaggtagagctcttaaggagttaa-ctattttaa |
202 |
Q |
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||||||||||||| || || |||||||||||||| ||||||||| |||||||||||||||||||| ||||||||| |
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| T |
9434114 |
atttgtccaatctgtatgtttttcatctagctccc--tttttctagttagagctcttaaggagttaatctattttaa |
9434188 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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