View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20177_low_9 (Length: 504)

Name: NF20177_low_9
Description: NF20177
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20177_low_9
NF20177_low_9
[»] chr7 (8 HSPs)
chr7 (9-487)||(42852615-42853093)
chr7 (253-411)||(42848198-42848352)
chr7 (162-484)||(42854664-42854979)
chr7 (236-355)||(42856378-42856497)
chr7 (236-355)||(42860445-42860564)
chr7 (49-111)||(42854041-42854103)
chr7 (15-111)||(42860281-42860383)
chr7 (115-159)||(42848006-42848050)
[»] chr4 (1 HSPs)
chr4 (426-487)||(27148-27209)
[»] chr3 (1 HSPs)
chr3 (49-101)||(21765105-21765157)


Alignment Details
Target: chr7 (Bit Score: 420; Significance: 0; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 420; E-Value: 0
Query Start/End: Original strand, 9 - 487
Target Start/End: Original strand, 42852615 - 42853093
Alignment:
Q  9 agcacagatgccatctttaggcggatcagcaattaatacggaatttcttagagcacgcgcacttatccgagataggatgtaagttactatttgtttgttt 108  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  42852615 agcacagatgccatctttaggcggatcagcaattaatacggaatttcttagagcacgcacacttatccgagataggatgtaagttactatttgtttgttt 42852714  T
Q  109 aacttgtcaataggtgtaatatttggagattgatattttcttgaaactaacaaatataaccatttaatcgttttaaatttattactcagattgtgattat 208  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||    
T  42852715 aacttgtcaataggtgtaatatttggagattgatattttcttgaaactaacaaatataaccatttaatcgttttaatttttttactcagattgtgattat 42852814  T
Q  209 atgtagtgtttatagttggtatttttgcgacttgcttgacgacattgaggcgcatttctttttctgctgctgtatagttattgcttatctttgaacttgg 308  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||    
T  42852815 atgtagtgtttatagttggtatttttgcgacttgcttgacgacattgagacacatttctttttctgctgctgtatagttattgcttatctttgaacttgg 42852914  T
Q  309 caagccattctatcaaagttattgatttggattactacagtacatatgtcattaattaagtcgattagattaatctctgtctatgtgtgttccacatgct 408  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  42852915 caagccattctatcaaagttattgatttggattactacagtacatatgtcatgaattaagtcgattagattaatctctgtctatgtgtgttccacatgct 42853014  T
Q  409 ttggnnnnnnnnnacgaagatacgatataatatgtgcataagatatatcacagtattctttttcattcttgtcgatttt 487  Q
    ||||         ||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||    
T  42853015 ttggtttttttttacgaagatacgatataatatgtgcataagatatatcacgttattctttttcattcttgtcgatttt 42853093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 253 - 411
Target Start/End: Original strand, 42848198 - 42848352
Alignment:
Q  253 ttgaggcgcatttctttttctgctgctgtatagttattgcttatctttgaacttggcaagccattctatcaaagttattgatttggattactacagtaca 352  Q
    ||||||| ||||||||| ||| | ||| ||||||||||||||| ||| ||||||   | |||||||||||||||||||||||| |||| ||| ||||| |    
T  42848198 ttgaggcacatttctttgtcttccgctatatagttattgcttaacttagaacttatgaggccattctatcaaagttattgattaggatcactgcagtata 42848297  T
Q  353 tatgtcattaattaagtcgattagattaatctctgtctatgtgtgttccacatgctttg 411  Q
    ||||||     ||||||| ||||||||| |||||||||| | ||||||||| |||||||    
T  42848298 tatgtc----cttaagtcaattagattactctctgtctacgggtgttccacctgctttg 42848352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 162 - 484
Target Start/End: Original strand, 42854664 - 42854979
Alignment:
Q  162 atataaccatttaatcgttttaaatttattactcagattgtgattatatgtagtgtttatagttggtatttttgcgacttgcttgacgacattgaggcgc 261  Q
    ||||||||||||| ||| ||||||||| ||| ||||||||| |  | |||||||||| || |  |   | |||| |||||||||||| |||||||||  |    
T  42854664 atataaccatttattcggtttaaattttttattcagattgtaaaaa-atgtagtgttcattgcagtggtatttgtgacttgcttgacaacattgaggtcc 42854762  T
Q  262 atttctttttctgctgctgtatagttattgcttatctttgaacttggcaagccattctatcaaagttattgatttggattactacagtacatatgtcatt 361  Q
     |||||   ||| | ||| ||||| ||||||||| ||| |||||||  | |||||||||||||||||||||||| |||| ||| ||||| |||||||       
T  42854763 gtttctgcatcttccgctatatagatattgcttaacttagaacttgtgaggccattctatcaaagttattgattaggatcactgcagtatatatgtc--- 42854859  T
Q  362 aattaagtcgattagattaatctctgtctatgtgtgttccacatgctttggnnnnnnnnnacgaagatacgatataatatgtgcataagatatatcacag 461  Q
      ||||||| ||||||||| |||||||| |||  ||||| || ||| || |         ||  |||||| ||||||||||||||||||||||||||  |    
T  42854860 -cttaagtcaattagattactctctgtcaatggatgttcgacctgcctttg--ttttttgactcagatacaatataatatgtgcataagatatatcatgg 42854956  T
Q  462 tattctttttcattcttgtcgat 484  Q
    |||||||| ||||||||||||||    
T  42854957 tattctttctcattcttgtcgat 42854979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 236 - 355
Target Start/End: Original strand, 42856378 - 42856497
Alignment:
Q  236 cgacttgcttgacgacattgaggcgcatttctttttctgctgctgtatagttattgcttatctttgaacttggcaagccattctatcaaagttattgatt 335  Q
    ||||||||||||| |||||||| | ||||||||| ||| | ||| ||||||||||||||| |||||||||||  | |||||||| |||||||||||||||    
T  42856378 cgacttgcttgacaacattgagacacatttctttgtcttcagctatatagttattgcttaactttgaacttgcaaggccattctgtcaaagttattgatt 42856477  T
Q  336 tggattactacagtacatat 355  Q
     |||| ||| ||||| ||||    
T  42856478 aggatcactgcagtatatat 42856497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 236 - 355
Target Start/End: Original strand, 42860445 - 42860564
Alignment:
Q  236 cgacttgcttgacgacattgaggcgcatttctttttctgctgctgtatagttattgcttatctttgaacttggcaagccattctatcaaagttattgatt 335  Q
    ||||||||||||| |||||||| | ||||||||| ||| | ||| ||||||||||||||| |||||||||||  | |||||||| |||||||||||||||    
T  42860445 cgacttgcttgacaacattgagacacatttctttgtcttcagctatatagttattgcttaactttgaacttgcaaggccattctgtcaaagttattgatt 42860544  T
Q  336 tggattactacagtacatat 355  Q
     |||| ||| ||||| ||||    
T  42860545 aggatcactgcagtatatat 42860564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 49 - 111
Target Start/End: Original strand, 42854041 - 42854103
Alignment:
Q  49 gaatttcttagagcacgcgcacttatccgagataggatgtaagttactatttgtttgtttaac 111  Q
    |||||||||||||||||| || |||| | ||| |||||||||||||| |||||||||||||||    
T  42854041 gaatttcttagagcacgctcatttattcaagagaggatgtaagttaccatttgtttgtttaac 42854103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 15 - 111
Target Start/End: Original strand, 42860281 - 42860383
Alignment:
Q  15 gatgccatctttaggcggatcagcaattaatacgga------atttcttagagcacgcgcacttatccgagataggatgtaagttactatttgtttgttt 108  Q
    |||||||||||||||||||||| | ||||| | |||      |||||||||||||| | || |||| | ||| |||||||||||| ||||||||||||||    
T  42860281 gatgccatctttaggcggatcaacgattaacatggaccaagaatttcttagagcacactcatttattcaagagaggatgtaagttgctatttgtttgttt 42860380  T
Q  109 aac 111  Q
    |||    
T  42860381 aac 42860383  T

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Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 115 - 159
Target Start/End: Original strand, 42848006 - 42848050
Alignment:
Q  115 tcaataggtgtaatatttggagattgatattttcttgaaactaac 159  Q
    ||||||||||||||| ||| | ||| |||||||||||||||||||    
T  42848006 tcaataggtgtaatacttgaaaattcatattttcttgaaactaac 42848050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 426 - 487
Target Start/End: Original strand, 27148 - 27209
Alignment:
Q  426 agatacgatataatatgtgcataagatatatcacagtattctttttcattcttgtcgatttt 487  Q
    |||||| || ||||||||||||||||||||||   |||||||||||||||||||| ||||||    
T  27148 agatacaatgtaatatgtgcataagatatatcgtggtattctttttcattcttgttgatttt 27209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 49 - 101
Target Start/End: Original strand, 21765105 - 21765157
Alignment:
Q  49 gaatttcttagagcacgcgcacttatccgagataggatgtaagttactatttg 101  Q
    ||||||||||| ||||||||| || | |||||| |||||||||||||||||||    
T  21765105 gaatttcttagggcacgcgcagttgtacgagatgggatgtaagttactatttg 21765157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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