View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20178_high_2 (Length: 448)
Name: NF20178_high_2
Description: NF20178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20178_high_2 |
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Alignment Details
Target: chr8 (Bit Score: 397; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 17 - 417
Target Start/End: Original strand, 27832631 - 27833031
Alignment:
| Q |
17 |
atgaacttgtttttatgccatcttgtggggacaattacatttctcttttctgcatgtgcttgggccactctcggcacaaagaatttctcagtagttctat |
116 |
Q |
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| T |
27832631 |
atgaacttgtttttatgccatcttgtggggacaattacatttctcttttctgcatgtgcttgggccactctcggcacaaagaatttctcagtagttctat |
27832730 |
T |
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| Q |
117 |
atagaaactaatttaaaagatattattctatatgtcgatatcattatacttctactacatgggacaggaccaattaaacgagcttttgcactcttattgg |
216 |
Q |
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| T |
27832731 |
atagaaactaatttaaaagatattattctatatgtcgatatcattatacttctactacatgggacaggaccaattaaacgagcttttgcactcttattgg |
27832830 |
T |
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| Q |
217 |
tccaactgaattcctataaatagccatcttaaggatagtgaaacctcagttgtgggatatcaaacacttcccaatggcaacttcaaaagttcttagtatt |
316 |
Q |
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| T |
27832831 |
tccaactgaattcctataaatagccatcttaaggatagtgaaacctcagttgtgggatatcaaacacttcccaatggcaacttcgaaagttcttagtatt |
27832930 |
T |
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| Q |
317 |
ttgttctttgtgttgttaggtttcggcatttgctctgctgctagaacactcctcacctttggtgtagatcatcgcattggtgcaggttaccatggtgaca |
416 |
Q |
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| T |
27832931 |
ttgttctttgtgttgttaggtttcggcatttgctctgctgctagaacactcctcacctttggtgtagatcatcgcattggtgcaggttaccatggtgaca |
27833030 |
T |
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| Q |
417 |
t |
417 |
Q |
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| T |
27833031 |
t |
27833031 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 289 - 417
Target Start/End: Original strand, 27838483 - 27838611
Alignment:
| Q |
289 |
aatggcaacttcaaaagttcttagtattttgttctttgtgttgttaggtttcggcatttgctctgctgctagaacactcctcacctttggtgtagatcat |
388 |
Q |
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| T |
27838483 |
aatgacaatttcgaaagttcttggtatttttttctttgtgttgttaggtttcggtatttgctctgccgctagaacactcctcacctttggtgtagatcat |
27838582 |
T |
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| Q |
389 |
cgcattggtgcaggttaccatggtgacat |
417 |
Q |
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| T |
27838583 |
ggcattggtgcaggtttccatggtgacat |
27838611 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 21 - 104
Target Start/End: Original strand, 27838237 - 27838322
Alignment:
| Q |
21 |
acttgtttttatgccatcttgtggggacaattacatttctcttttctgcatgtgcttgggcca--ctctcggcacaaagaatttct |
104 |
Q |
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| T |
27838237 |
acttgtttgtatcccaccttgtggggacaattacatttctcttctctgcatgtgcttgggccactctctcggcacaaagaatttct |
27838322 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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