View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20178_low_10 (Length: 272)
Name: NF20178_low_10
Description: NF20178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20178_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 204
Target Start/End: Original strand, 10111515 - 10111720
Alignment:
| Q |
1 |
aatccaatttctccaattacatgttttagcaaatagtttaagcttatttccaccaaaaactgacctattttaactattgtttctaatttctatattaggt |
100 |
Q |
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| T |
10111515 |
aatccaatttctccaattacatgttttagcaaatagtttaagcttatttccaccaaaaactgacctattttaactattgtttctaatttctatattaggt |
10111614 |
T |
|
| Q |
101 |
gtcgatccttttttgtgataa--tgtgtgtaggtagcattttgaatgtggaaggcacggttcaaaaagttaaagatcttttactaaattaatccatcctc |
198 |
Q |
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| T |
10111615 |
gtcgatccttttttgtgataatgtgtgtgtaggtagcattttgaatgtggaaggcacggttcaaaaagttaaagatcttttactaaattaatccatcctc |
10111714 |
T |
|
| Q |
199 |
ttcaat |
204 |
Q |
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|||||| |
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| T |
10111715 |
ttcaat |
10111720 |
T |
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