View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20178_low_12 (Length: 261)
Name: NF20178_low_12
Description: NF20178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20178_low_12 |
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Alignment Details
Target: chr7 (Bit Score: 89; Significance: 5e-43; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 152 - 247
Target Start/End: Original strand, 33816945 - 33817041
Alignment:
| Q |
152 |
aaaatgatgcattgataaggtataagcaacccatcatttttagaaaaatagttggttcggtcaacaacaaagaatgcgatg-tttactaagaataat |
247 |
Q |
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| T |
33816945 |
aaaatgatgcattgataaggtataagcaacccatcatttttagaaaaatagttggttcggtcaacaacaaagaatgcgatgttttactaagaataat |
33817041 |
T |
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Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 46 - 89
Target Start/End: Original strand, 33816836 - 33816879
Alignment:
| Q |
46 |
cctagtacaaaaacatgtacttttgaaactcaagttgttcaatc |
89 |
Q |
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| T |
33816836 |
cctagtacaaaaacatgcacttttgaaagtcaagttgttcaatc |
33816879 |
T |
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