View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20178_low_13 (Length: 238)
Name: NF20178_low_13
Description: NF20178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20178_low_13 |
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Alignment Details
Target: chr4 (Bit Score: 118; Significance: 2e-60; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 15 - 184
Target Start/End: Complemental strand, 27436053 - 27435881
Alignment:
| Q |
15 |
gagatgaacaggaaaagaacagagaacagcatgaaagtttggttacgatgattcatgacttcttcttctgacttgatcgtac--gtagtatggtatgtta |
112 |
Q |
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| T |
27436053 |
gagaagaacaggaaaaggacagagaacagcatgaaagtttggttacgatgattcatgacttcttcttctgacttgaacttgatggtagtatggtatgtta |
27435954 |
T |
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| Q |
113 |
tgatatgttaagttgggtgctgagtgagactttatacagtggttacgattactgaa-aaaaggggataataat |
184 |
Q |
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| T |
27435953 |
tgatatgttaagttgggtgctgagtgagtctttatatagtggttacgattactgaaaaaaaggggattataat |
27435881 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 96 - 210
Target Start/End: Complemental strand, 27944481 - 27944363
Alignment:
| Q |
96 |
cgtagtatggtatgttatgatatgttaagttgggtgctgagtgagactttatacagtggttacgattactgaaaaaaggggataataatgaa----tgat |
191 |
Q |
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| T |
27944481 |
cgtagtatggtatgttatgatatgttaagttgggtgctgagtgagtctttatatagtggttacgattactgaaaaaaggggataataatgaatgagtgat |
27944382 |
T |
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| Q |
192 |
aacaaatagatgcatgaca |
210 |
Q |
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| T |
27944381 |
aacaaatagatgcatgaca |
27944363 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 142 - 210
Target Start/End: Original strand, 27550501 - 27550566
Alignment:
| Q |
142 |
ctttatacagtggttacgattactgaaaaaaggggataataatgaatgataacaaatagatgcatgaca |
210 |
Q |
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| T |
27550501 |
ctttatatagtggttacgattac---aataaagggataataatgagtgataacaaatagatgcaggaca |
27550566 |
T |
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