View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20178_low_3 (Length: 445)
Name: NF20178_low_3
Description: NF20178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20178_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 333; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 19 - 429
Target Start/End: Original strand, 11803690 - 11804102
Alignment:
| Q |
19 |
cgaatccaggtagccttaatcatacatttatttgtctcattccaaagaaaaagaaaccaaaagtggcaactgattttcgacctatatctctttgcaaggt |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||| || |
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| T |
11803690 |
cgaatccaggtagccttaatcatacatttatttgtctcattccaaagaaaaagaaaccaaaagtagcgactgattttcgacctatatctctttgcaatgt |
11803789 |
T |
|
| Q |
119 |
aatatacaaaattatttcaaaaactattgcgaataggttgaaaatcgtcctctctgacattattggaaaatttcaaagtgcttttgttccggggc-attt |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
11803790 |
aatatacaaaattatttcaaaaactattgcgaataggttgaaaatcgtcctctctgacattattggaaaatttcaaagtgcttttgttccggggcggttt |
11803889 |
T |
|
| Q |
218 |
agttactgacaatgcgttagtggctttcgaatcgttccattggttgag-nnnnnnnngtggtaaaaaagggtgtgtaagcatcaaactagatatgacaaa |
316 |
Q |
| |
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| T |
11803890 |
aactactgacaatgcgttagtggctttcgaatcgttccattggttgagaaaaaaaaagtggtaaaaaagggtgtgtaagcatcaaactagatatgacaaa |
11803989 |
T |
|
| Q |
317 |
agcatatgaccagatagaatgggaattccttattgcagtgttgaactcaatgggtttccctagaaaatggcaatctcttgtgttgaattgtgttttcagt |
416 |
Q |
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||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11803990 |
agcatatgaccgaatagactgggaattccttattgcagtgttgaactcaatgggtttccctagaaaatggcaatctcttgtgttgaattgtgttttcagt |
11804089 |
T |
|
| Q |
417 |
gtctttttctgtg |
429 |
Q |
| |
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|| |||||||||| |
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| T |
11804090 |
gtgtttttctgtg |
11804102 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 34 - 161
Target Start/End: Original strand, 11599062 - 11599189
Alignment:
| Q |
34 |
ttaatcatacatttatttgtctcattccaaagaaaaagaaaccaaaagtggcaactgattttcgacctatatctctttgcaaggtaatatacaaaattat |
133 |
Q |
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||||| |||||| ||| ||||||||||| || || ||||||||||| ||| || |||||||| || ||| ||||||||||| || | | ||||| || |
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| T |
11599062 |
ttaattatacatatatctgtctcattccgaaaaagaagaaaccaaaggtgccatgtgattttccacatatttctctttgcaatgttctttttaaaataat |
11599161 |
T |
|
| Q |
134 |
ttcaaaaactattgcgaataggttgaaa |
161 |
Q |
| |
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| ||||||| ||||| |||||||||||| |
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| T |
11599162 |
tacaaaaacaattgcaaataggttgaaa |
11599189 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 252; Significance: 1e-140; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 20 - 429
Target Start/End: Original strand, 20778197 - 20778610
Alignment:
| Q |
20 |
gaatccaggtagccttaatcatacatttatttgtctcattccaaagaaaaagaaaccaaaagtggcaactgattttcgacctatatctctttgcaaggta |
119 |
Q |
| |
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||||||||||| | |||||||||| ||||||||||||||||||||||||||||||| ||||||||| | ||||||||||||||||||||||||||| ||| |
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| T |
20778197 |
gaatccaggtaacattaatcatacttttatttgtctcattccaaagaaaaagaaacaaaaagtggcgaatgattttcgacctatatctctttgcaatgta |
20778296 |
T |
|
| Q |
120 |
atatacaaaattatttcaaaaactattgcgaataggttgaaaatcgtcctctctgacattattggaaaatttcaaagtgcttttgttccggggcatttag |
219 |
Q |
| |
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|||| |||||||||||||||||||||||| ||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||| |||| |||| |
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| T |
20778297 |
atatgcaaaattatttcaaaaactattgcaaataggttgaaaatcatcctctccaacattattggaaaatttcaaagtgcttttgttccagggcgtttaa |
20778396 |
T |
|
| Q |
220 |
ttactgacaatgcgttagtggctttcgaatcgttccattggttgag--nnnnnnnngtggtaaaaaagggtgtgtaagcatcaaactagatatgacaaaa |
317 |
Q |
| |
|
||||||||||||| ||||||||||||||||| ||||| ||| |||| |||| ||||| ||||||||| ||||||||||||||||| ||||| |
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|
| T |
20778397 |
ttactgacaatgcattagtggctttcgaatcattccagtggatgagaaaaaaaagagtggcaaaaaggggtgtgtaggcatcaaactagatatggcaaaa |
20778496 |
T |
|
| Q |
318 |
gcatatgaccagatagaatgggaattccttattgcagtgttgaactcaatgggtttccctagaaaatggcaatctcttgtgttgaattgtgtt--ttcag |
415 |
Q |
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|||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||| | |
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| T |
20778497 |
gcatatgaccggatagaatgggaattccttattgcggtgttgaactcaatgggtttccctcaaaaatggcaatctcttgtgttgaattgtgtttcttctg |
20778596 |
T |
|
| Q |
416 |
tgtctttttctgtg |
429 |
Q |
| |
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||||||||| |||| |
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| T |
20778597 |
tgtctttttatgtg |
20778610 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 89 - 206
Target Start/End: Original strand, 5142210 - 5142327
Alignment:
| Q |
89 |
tgattttcgacctatatctctttgcaaggtaatatacaaaattatttcaaaaactattgcgaataggttgaaaatcgtcctctctgacattattggaaaa |
188 |
Q |
| |
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|||||||||||||||||| | ||||| ||||| || | ||||| | ||||||||||| |||||||||||||| | || ||||||||||||||||| |
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| T |
5142210 |
tgattttcgacctatatcgttgtgcaatgtaatttataggattatatttaaaactattgcaaataggttgaaaattatactacctgacattattggaaaa |
5142309 |
T |
|
| Q |
189 |
tttcaaagtgcttttgtt |
206 |
Q |
| |
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|||||||||||||||||| |
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| T |
5142310 |
tttcaaagtgcttttgtt |
5142327 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 40 - 250
Target Start/End: Complemental strand, 14071836 - 14071625
Alignment:
| Q |
40 |
atacatttatttgtctcattccaaagaaaaa-gaaaccaaaagtggcaactgattttcgacctatatctctttgcaaggtaatatacaaaattatttcaa |
138 |
Q |
| |
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|||||| ||| |||||||||| ||| ||||| ||| || || ||| || ||||||||||||||| || |||||||| || || | ||||| ||| ||| |
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| T |
14071836 |
atacatatatctgtctcattcaaaaaaaaaaagaagccgaaggtgccagatgattttcgacctatttcactttgcaatgtcatttttaaaataattacaa |
14071737 |
T |
|
| Q |
139 |
aaactattgcgaataggttgaaaatcgtcctctctgacattattggaaaatttcaaagtgcttttgttccggggcatttagttactgacaatgcgttagt |
238 |
Q |
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| T |
14071736 |
aaacaatttcaaataggttgaaattgattcttccggatatcattggaaaattccaaagtgcttttgttccgggacgtttaattactcataatgccttact |
14071637 |
T |
|
| Q |
239 |
ggctttcgaatc |
250 |
Q |
| |
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||||| ||||| |
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| T |
14071636 |
agcttttgaatc |
14071625 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 40 - 250
Target Start/End: Complemental strand, 14381864 - 14381653
Alignment:
| Q |
40 |
atacatttatttgtctcattccaaagaaaaa-gaaaccaaaagtggcaactgattttcgacctatatctctttgcaaggtaatatacaaaattatttcaa |
138 |
Q |
| |
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|||||| ||| |||||||||| ||| ||||| ||| || || ||| || ||||||||||||||| || |||||||| || || | ||||| ||| ||| |
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| T |
14381864 |
atacatatatctgtctcattcaaaaaaaaaaagaagccgaaggtgccagatgattttcgacctatttcactttgcaatgtcatttttaaaataattacaa |
14381765 |
T |
|
| Q |
139 |
aaactattgcgaataggttgaaaatcgtcctctctgacattattggaaaatttcaaagtgcttttgttccggggcatttagttactgacaatgcgttagt |
238 |
Q |
| |
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|
| T |
14381764 |
aaacaatttcaaataggttgaaattgattcttccggatatcattggaaaattccaaagtgcttttgttccgggacgtttaattactcataatgccttact |
14381665 |
T |
|
| Q |
239 |
ggctttcgaatc |
250 |
Q |
| |
|
||||| ||||| |
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|
| T |
14381664 |
agcttttgaatc |
14381653 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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