View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20178_low_4 (Length: 440)
Name: NF20178_low_4
Description: NF20178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20178_low_4 |
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| [»] chr5 (2 HSPs) |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 387; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 14 - 440
Target Start/End: Complemental strand, 16911578 - 16911152
Alignment:
| Q |
14 |
cataggtaactattgaattaattactaattacctcgttgtgatctgtgaaatggctattggagatggtaatagcagtggatcccataatggcatcaacta |
113 |
Q |
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|||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16911578 |
cataagtaactatcgaattaattactaattacctcgttgtgatctgtgaaatggctattggagatggtaatagcagtggatcccataatggcatcaacta |
16911479 |
T |
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| Q |
114 |
gtccatccctacagtttctcatggaaacatggtcaatccaaatattgctagagccaaaaattgaaattccatcaccatcactcatagtcctttgaccaaa |
213 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16911478 |
gtccatctctacagtttctcatggaaacatggtcaatccaaatattgctagagccaaaaattgaaattccatcaccatcactcatagtcctttgaccaaa |
16911379 |
T |
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| Q |
214 |
atggtcctgaccatctctaataagtccaccacttccaaccacgatgtcaaaaattttgattccatggatgatcacattctcgatgaactggatagtaata |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16911378 |
atggtcctgaccatctctaataagtccaccacttccaaccacgatgtcaaaaattttgattccatggatgatcacattctcgatgaactggatagtaata |
16911279 |
T |
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| Q |
314 |
ccagcaccactagcaatggtaacatcagcccctcttccatcaatggtcttgtgacttgtcattatgagctcctggttgagtctaatgggcatgctacgtg |
413 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||| | |
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| T |
16911278 |
ccagcaccactagcaatggtaacatcagctcctcttccatcaatggtcttgtgacttgtcattatgagctcctggttgagcctaatggtcatgctacgag |
16911179 |
T |
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| Q |
414 |
cgagggtgatgcacaaaggcccctttc |
440 |
Q |
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| T |
16911178 |
cgaaggtgatccacaaaggcccatttc |
16911152 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 14 - 440
Target Start/End: Complemental strand, 16915983 - 16915557
Alignment:
| Q |
14 |
cataggtaactattgaattaattactaattacctcgttgtgatctgtgaaatggctattggagatggtaatagcagtggatcccataatggcatcaacta |
113 |
Q |
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|||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
16915983 |
cataagtaactatcgaattaattactaattacctcgttgtgatctgtgaaatggctattggagatggtaatagcagtggatcccataatggcatcaatga |
16915884 |
T |
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| Q |
114 |
gtccatccctacagtttctcatggaaacatggtcaatccaaatattgctagagccaaaaattgaaattccatcaccatcactcatagtcctttgaccaaa |
213 |
Q |
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| T |
16915883 |
gtccatctctgcagtttctcatggaaacatggtcaatccaaatatggcttgagccaaaaattgaaattccatcaccatcactaatagtccttagaccata |
16915784 |
T |
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| Q |
214 |
atggtcctgaccatctctaataagtccaccacttccaaccacgatgtcaaaaattttgattccatggatgatcacattctcgatgaactggatagtaata |
313 |
Q |
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|||||||| || |||||||| |||||||||||||||||||| |||||| |||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
16915783 |
atggtcctcactatctctaacaagtccaccacttccaaccataatgtcataaattttgatcccatggatgatcacattctcgatgaactggatagtaata |
16915684 |
T |
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| Q |
314 |
ccagcaccactagcaatggtaacatcagcccctcttccatcaatggtcttgtgacttgtcattatgagctcctggttgagtctaatgggcatgctacgtg |
413 |
Q |
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||||||||| ||||||||||||||||||| |||| ||||||||||||||||| || || ||||||||||||||||||||| ||||| ||||||||| | |
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| T |
16915683 |
ccagcaccattagcaatggtaacatcagctcctcgtccatcaatggtcttgttacctgccattatgagctcctggttgagcctaatcttcatgctacgag |
16915584 |
T |
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| Q |
414 |
cgagggtgatgcacaaaggcccctttc |
440 |
Q |
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||| | |||| ||||||||||| |||| |
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| T |
16915583 |
cgaagatgatccacaaaggcccatttc |
16915557 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 362 - 440
Target Start/End: Original strand, 1872577 - 1872655
Alignment:
| Q |
362 |
ttgtgacttgtcattatgagctcctggttgagtctaatgggcatgctacgtgcgagggtgatgcacaaaggcccctttc |
440 |
Q |
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|||||||||||||||||||||||||||||||| ||||||| ||||||||| |||| |||||| ||||||||||| |||| |
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| T |
1872577 |
ttgtgacttgtcattatgagctcctggttgagcctaatggtcatgctacgagcgaaggtgatccacaaaggcccatttc |
1872655 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 44 - 196
Target Start/End: Original strand, 25007053 - 25007205
Alignment:
| Q |
44 |
acctcgttgtgatctgtgaaatggctattggagatggtaatagcagtggatcccataatggcatcaactagtccatccctacagtttctcatggaaacat |
143 |
Q |
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||||| ||||| || ||||| || || || |||||||||||||||||||| ||||| || ||||||| | ||||| |||| |||||||||||||||| |
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| T |
25007053 |
acctcattgtggtcagtgaagtgactgttagagatggtaatagcagtggaacccattatagcatcaatcaaaccatcagtacaatttctcatggaaacat |
25007152 |
T |
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| Q |
144 |
ggtcaatccaaatattgctagagccaaaaattgaaattccatcaccatcactc |
196 |
Q |
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| T |
25007153 |
gatcaatccaaacattactagcaccaaagatggaaataccatcaccatcactc |
25007205 |
T |
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