View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20178_low_5 (Length: 395)

Name: NF20178_low_5
Description: NF20178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20178_low_5
NF20178_low_5
[»] chr2 (4 HSPs)
chr2 (14-378)||(44223301-44223665)
chr2 (14-378)||(44234123-44234487)
chr2 (14-378)||(44211139-44211503)
chr2 (18-116)||(43457698-43457796)
[»] chr4 (5 HSPs)
chr4 (24-186)||(2877058-2877220)
chr4 (18-178)||(2886833-2886993)
chr4 (18-175)||(2897383-2897540)
chr4 (290-369)||(2876644-2876723)
chr4 (283-351)||(2886667-2886735)
[»] chr1 (2 HSPs)
chr1 (69-133)||(2149066-2149130)
chr1 (14-133)||(2160994-2161113)
[»] chr7 (9 HSPs)
chr7 (14-133)||(39547624-39547743)
chr7 (308-358)||(39337952-39338002)
chr7 (308-358)||(39349129-39349179)
chr7 (308-351)||(39365609-39365652)
chr7 (308-351)||(39538618-39538661)
chr7 (14-133)||(39564403-39564522)
chr7 (308-358)||(39564836-39564886)
chr7 (24-130)||(39622230-39622336)
chr7 (14-139)||(39365925-39366050)
[»] chr3 (1 HSPs)
chr3 (23-91)||(49773108-49773176)


Alignment Details
Target: chr2 (Bit Score: 325; Significance: 0; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 14 - 378
Target Start/End: Original strand, 44223301 - 44223665
Alignment:
Q  14 atatccacctgttttcctcccagccagaacatacatcagagttgttttaccagatccacttacacccatcaaagctgtgagcaccccaggcctgaatgca 113  Q
    |||||||||||||||||| ||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||| || || ||||||||||||    
T  44223301 atatccacctgttttcctaccagccagaacatccatcagagttgttttaccagctccacttacacccatcaaagctgtgagaacaccgggcctgaatgca 44223400  T
Q  114 ccactaacacccttcaaaagcactaatctatcttctctaacaccttgctccttcatttcctgccagttgaaataaaagtcatgtgagaaaagttattatt 213  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44223401 ccactaacacccttcaaaagcactaatctgtcttctctaacaccttgctccttcatttcctgccagttgaaataaaagtcatgtgagaaaagttattatt 44223500  T
Q  214 gtttgagaaaatatgaatcgttaaagatatctaaaagccgaatgtatcagtttgtgcgaatcttaccactggcatatcaacagagtatacaatatcatca 313  Q
    |||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44223501 gtttgagaaaatatgaattgttaaagatatctaaaagccgaacgtatcagtttgtgcgaatcttaccactggcatatcaacagagtatacaatatcatca 44223600  T
Q  314 aaagtgatagaatgtggctcaaatggaagaaccattccctttttctttccatggctggactctgt 378  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  44223601 aaagtgatagaatgtggttcaaatggaagaaccattccctttttctttccatggctggactctgt 44223665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 14 - 378
Target Start/End: Original strand, 44234123 - 44234487
Alignment:
Q  14 atatccacctgttttcctcccagccagaacatacatcagagttgttttaccagatccacttacacccatcaaagctgtgagcaccccaggcctgaatgca 113  Q
    |||||||||||||||||| ||||||||||||| |||||||||||||||||||| ||||||||||||||||||||| || || || ||||||||||||||     
T  44234123 atatccacctgttttcctaccagccagaacatccatcagagttgttttaccagctccacttacacccatcaaagccgtaagtacaccaggcctgaatgcg 44234222  T
Q  114 ccactaacacccttcaaaagcactaatctatcttctctaacaccttgctccttcatttcctgccagttgaaataaaagtcatgtgagaaaagttattatt 213  Q
    ||||||||||||||||||||||||||||| || ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| ||    
T  44234223 ccactaacacccttcaaaagcactaatctgtcctctgtaacaccttgctccttcatttcctgccagttgaaataaaagtcatgtgagaaaaatcattttt 44234322  T
Q  214 gtttgagaaaatatgaatcgttaaagatatctaaaagccgaatgtatcagtttgtgcgaatcttaccactggcatatcaacagagtatacaatatcatca 313  Q
    || ||||||||||||||| |||| | |||||||||||| |||  ||||| ||||||||| ||||||| ||||||| ||||||||||||||||||||||||    
T  44234323 gtctgagaaaatatgaattgttatacatatctaaaagctgaacatatcactttgtgcgagtcttaccgctggcatgtcaacagagtatacaatatcatca 44234422  T
Q  314 aaagtgatagaatgtggctcaaatggaagaaccattccctttttctttccatggctggactctgt 378  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||    
T  44234423 aaagtgatagaatgtggttcaaatggaagaaccattccctttttctttccatggctggattctgt 44234487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 14 - 378
Target Start/End: Original strand, 44211139 - 44211503
Alignment:
Q  14 atatccacctgttttcctcccagccagaacatacatcagagttgttttaccagatccacttacacccatcaaagctgtgagcaccccaggcctgaatgca 113  Q
    |||||||||||||||||| ||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||| || || ||||||||||||    
T  44211139 atatccacctgttttcctaccagccagaacatccatcagagttgttttaccagctccacttacacccatcaaagctgtgagaacaccgggcctgaatgca 44211238  T
Q  114 ccactaacacccttcaaaagcactaatctatcttctctaacaccttgctccttcatttcctgccagttgaaataaaagtcatgtgagaaaagttattatt 213  Q
    || |||||||||||||||||||||| ||| || ||| |||||||||||||||||||||||||||||||||||| ||||||| |||||||||||| || ||    
T  44211239 ccgctaacacccttcaaaagcactagtctgtcctctgtaacaccttgctccttcatttcctgccagttgaaat-aaagtcaagtgagaaaagttcttttt 44211337  T
Q  214 gtttgagaaaa-tatgaatcgttaaagatatctaaaagccgaatgtatcagtttgtgcgaatcttaccactggcatatcaacagagtatacaatatcatc 312  Q
    || || |||||  |||||| |||| ||||||||||| || |||  ||||| |||||  || ||||||  ||||||| |||||||||||||||||||||||    
T  44211338 gtctgcgaaaacaatgaattgttatagatatctaaacgctgaacatatcactttgtaagagtcttacagctggcatgtcaacagagtatacaatatcatc 44211437  T
Q  313 aaaagtgatagaatgtggctcaaatggaagaaccattccctttttctttccatggctggactctgt 378  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||    
T  44211438 aaaagtgatagaatgtggttcaaatggaagaaccattccctttttctttccatggctggacactgt 44211503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 116
Target Start/End: Original strand, 43457698 - 43457796
Alignment:
Q  18 ccacctgttttcctcccagccagaacatacatcagagttgttttaccagatccacttacacccatcaaagctgtgagcaccccaggcctgaatgcacca 116  Q
    |||||||| ||||| ||||| | ||||| ||||| |||||| || |||| |||||| || ||||| ||||| || || || ||||||||||||||||||    
T  43457698 ccacctgtcttccttccagctaaaacatccatcaaagttgtctttccagctccactaactcccattaaagccgttagaactccaggcctgaatgcacca 43457796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 79; Significance: 8e-37; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 24 - 186
Target Start/End: Complemental strand, 2877220 - 2877058
Alignment:
Q  24 gttttcctcccagccagaacatacatcagagttgttttaccagatccacttacacccatcaaagctgtgagcaccccaggcctgaatgcaccactaacac 123  Q
    |||||||| |||||||  |||| ||||| ||| |||||||||| |||||| |||||||||||||||||||| || ||||| || |||||||||||||| |    
T  2877220 gttttcctaccagccaatacatccatcaaagtagttttaccagctccactaacacccatcaaagctgtgagaacaccaggtctaaatgcaccactaactc 2877121  T
Q  124 ccttcaaaagcactaatctatcttctctaacaccttgctccttcatttcctgccagttgaaat 186  Q
    |||||||||||||||  ||||| ||| | |||||||| || |||||||||||||||| |||||    
T  2877120 ccttcaaaagcactagcctatcctctatcacaccttgatctttcatttcctgccagtcgaaat 2877058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 18 - 178
Target Start/End: Complemental strand, 2886993 - 2886833
Alignment:
Q  18 ccacctgttttcctcccagccagaacatacatcagagttgttttaccagatccacttacacccatcaaagctgtgagcaccccaggcctgaatgcaccac 117  Q
    ||||| |||||||| ||||||| ||||| ||| | ||| |||||||||| |||||| || ||||| || |||||||| || |||||||| ||||||||||    
T  2886993 ccaccagttttcctaccagccaaaacatccattaaagtagttttaccagctccactaactcccattaaggctgtgagaacaccaggcctaaatgcaccac 2886894  T
Q  118 taacacccttcaaaagcactaatctatcttctctaacaccttgctccttcatttcctgcca 178  Q
    |||||||||||||||| ||||||||||| |||   || |||||  ||||||||||||||||    
T  2886893 taacacccttcaaaagtactaatctatcctctagtaccccttgaaccttcatttcctgcca 2886833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 18 - 175
Target Start/End: Original strand, 2897383 - 2897540
Alignment:
Q  18 ccacctgttttcctcccagccagaacatacatcagagttgttttaccagatccacttacacccatcaaagctgtgagcaccccaggcctgaatgcaccac 117  Q
    ||||| ||||| || ||||||| ||||| ||| | ||| |||||||||| |||||| || ||||| || |||||||| || |||||||| ||||||||||    
T  2897383 ccaccggtttttctaccagccaaaacatccattaaagtagttttaccagctccactaactcccattaatgctgtgagaacaccaggcctaaatgcaccac 2897482  T
Q  118 taacacccttcaaaagcactaatctatcttctctaacaccttgctccttcatttcctg 175  Q
    |||||||||||||||| ||||||||||| |||   ||||||||  |||||||||||||    
T  2897483 taacacccttcaaaagtactaatctatcctctactacaccttgaaccttcatttcctg 2897540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 290 - 369
Target Start/End: Complemental strand, 2876723 - 2876644
Alignment:
Q  290 tcaacagagtatacaatatcatcaaaagtgatagaatgtggctcaaatggaagaaccattccctttttctttccatggct 369  Q
    ||||||||||||||||| || ||||| |||||||||| ||| ||||| || |||||||||||| ||| ||| ||| ||||    
T  2876723 tcaacagagtatacaatttcgtcaaatgtgatagaatatggttcaaaaggtagaaccattcccctttccttcccacggct 2876644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 283 - 351
Target Start/End: Complemental strand, 2886735 - 2886667
Alignment:
Q  283 tggcatatcaacagagtatacaatatcatcaaaagtgatagaatgtggctcaaatggaagaaccattcc 351  Q
    |||||| |||||||| ||||||| ||| ||||| |  ||||||||||| ||||| ||||||||||||||    
T  2886735 tggcatgtcaacagaatatacaacatcgtcaaaggctatagaatgtggttcaaaaggaagaaccattcc 2886667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 69 - 133
Target Start/End: Original strand, 2149066 - 2149130
Alignment:
Q  69 ccacttacacccatcaaagctgtgagcaccccaggcctgaatgcaccactaacacccttcaaaag 133  Q
    ||||||||||||||||||||||| || || ||||| || || |||||||||||||||||||||||    
T  2149066 ccacttacacccatcaaagctgttagtactccaggtctaaaagcaccactaacacccttcaaaag 2149130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 14 - 133
Target Start/End: Original strand, 2160994 - 2161113
Alignment:
Q  14 atatccacctgttttcctcccagccagaacatacatcagagttgttttaccagatccacttacacccatcaaagctgtgagcaccccaggcctgaatgca 113  Q
    ||||||||| |||||||| ||||| | ||||| ||| ||||| || || || |  |||||||||||||||||||| || || || |||||||| || ||     
T  2160994 atatccaccagttttccttccagctaaaacatccattagagtagtctttccggcaccacttacacccatcaaagcagttagtactccaggcctaaaggcg 2161093  T
Q  114 ccactaacacccttcaaaag 133  Q
    ||| | | ||||||||||||    
T  2161094 ccattgatacccttcaaaag 2161113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000004; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 14 - 133
Target Start/End: Original strand, 39547624 - 39547743
Alignment:
Q  14 atatccacctgttttcctcccagccagaacatacatcagagttgttttaccagatccacttacacccatcaaagctgtgagcaccccaggcctgaatgca 113  Q
    ||||||||| ||||| || ||||  || |||| ||||||||||||||| || |  ||| | |||||||||| ||| ||||| || ||||| ||||| ||     
T  39547624 atatccaccagtttttctaccagaaagtacatccatcagagttgttttgcctgcaccagtcacacccatcagagcagtgagaacaccaggtctgaaagct 39547723  T
Q  114 ccactaacacccttcaaaag 133  Q
    ||||| ||||||||||||||    
T  39547724 ccacttacacccttcaaaag 39547743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 308 - 358
Target Start/End: Complemental strand, 39338002 - 39337952
Alignment:
Q  308 tcatcaaaagtgatagaatgtggctcaaatggaagaaccattccctttttc 358  Q
    |||||||| || ||||||||||| ||||| |||||||||||||||||||||    
T  39338002 tcatcaaaggttatagaatgtggttcaaaaggaagaaccattccctttttc 39337952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 308 - 358
Target Start/End: Complemental strand, 39349179 - 39349129
Alignment:
Q  308 tcatcaaaagtgatagaatgtggctcaaatggaagaaccattccctttttc 358  Q
    |||||||| || ||||||||||| ||||| |||||||||||||||||||||    
T  39349179 tcatcaaaggttatagaatgtggttcaaaaggaagaaccattccctttttc 39349129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 308 - 351
Target Start/End: Complemental strand, 39365652 - 39365609
Alignment:
Q  308 tcatcaaaagtgatagaatgtggctcaaatggaagaaccattcc 351  Q
    |||||||| ||||| |||||||| ||||||||||||||||||||    
T  39365652 tcatcaaaggtgattgaatgtggttcaaatggaagaaccattcc 39365609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 308 - 351
Target Start/End: Original strand, 39538618 - 39538661
Alignment:
Q  308 tcatcaaaagtgatagaatgtggctcaaatggaagaaccattcc 351  Q
    |||||||| ||||| |||||||| ||||||||||||||||||||    
T  39538618 tcatcaaaggtgattgaatgtggttcaaatggaagaaccattcc 39538661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 14 - 133
Target Start/End: Original strand, 39564403 - 39564522
Alignment:
Q  14 atatccacctgttttcctcccagccagaacatacatcagagttgttttaccagatccacttacacccatcaaagctgtgagcaccccaggcctgaatgca 113  Q
    |||||| || |||||||| ||||  || |||| ||||||||||||||| ||||  ||  | |||||||| | ||| ||||| || ||||| ||||| ||     
T  39564403 atatcctccggttttcctaccagaaagcacatccatcagagttgttttgccagcaccggtcacacccattagagcagtgagaacaccaggtctgaaagct 39564502  T
Q  114 ccactaacacccttcaaaag 133  Q
    ||||| ||||||||||||||    
T  39564503 ccacttacacccttcaaaag 39564522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 308 - 358
Target Start/End: Original strand, 39564836 - 39564886
Alignment:
Q  308 tcatcaaaagtgatagaatgtggctcaaatggaagaaccattccctttttc 358  Q
    |||||||| || ||||||||||| ||||| ||||||||||||||| |||||    
T  39564836 tcatcaaaggttatagaatgtggttcaaaaggaagaaccattccccttttc 39564886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 24 - 130
Target Start/End: Original strand, 39622230 - 39622336
Alignment:
Q  24 gttttcctcccagccagaacatacatcagagttgttttaccagatccacttacacccatcaaagctgtgagcaccccaggcctgaatgcaccactaacac 123  Q
    ||||| || ||||| || |||| ||||||||||||||| ||||  ||| | |||||||||| ||||||||| ||  | || ||||||| |||||| ||||    
T  39622230 gtttttcttccagctagtacatccatcagagttgttttgccagcaccagtcacacccatcagagctgtgagaacagccggtctgaatgaaccactgacac 39622329  T
Q  124 ccttcaa 130  Q
    | |||||    
T  39622330 cattcaa 39622336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 139
Target Start/End: Complemental strand, 39366050 - 39365925
Alignment:
Q  14 atatccacctgttttcctcccagccagaacatacatcagagttgttttaccagatccacttacacccatcaaagctgtgagcaccccaggcctgaatgca 113  Q
    ||||||||| ||||| || ||||  || |||| ||||||||||||||| ||||  ||  | |||||||||| ||| ||||| || || || ||||| ||     
T  39366050 atatccaccagtttttctaccagaaagcacatccatcagagttgttttgccagcaccggtcacacccatcagagccgtgagaacacctggtctgaaagct 39365951  T
Q  114 ccactaacacccttcaaaagcactaa 139  Q
    ||||||| |||||||| ||| |||||    
T  39365950 ccactaagacccttcagaagaactaa 39365925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 23 - 91
Target Start/End: Complemental strand, 49773176 - 49773108
Alignment:
Q  23 tgttttcctcccagccagaacatacatcagagttgttttaccagatccacttacacccatcaaagctgt 91  Q
    ||||||||| |||| ||| |||| ||| |||||||||||||||| |||||||| |||||| | ||||||    
T  49773176 tgttttccttccagacagcacatccattagagttgttttaccagctccacttatacccattagagctgt 49773108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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