View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20178_low_7 (Length: 360)
Name: NF20178_low_7
Description: NF20178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20178_low_7 |
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Alignment Details
Target: chr6 (Bit Score: 323; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 16 - 342
Target Start/End: Original strand, 30771689 - 30772015
Alignment:
| Q |
16 |
aatatccagtttatgtaatgcctattggatctacacaacaaccatataacatgacattgcaacataatataaatgaacctaatgtggtagcttctagtag |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
30771689 |
aatatccagtttatgtaatgcctattggatctacacaacaaccatataacatgacattgcaacataatataaatgaccctaatgtggtagcttctagtag |
30771788 |
T |
|
| Q |
116 |
accaataataccacaaaatggaactccaccaatttaccctaataaagcacctaaccctaatgtggcatcaaattcaacatttgttcaagtaccttcaaat |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30771789 |
accaataataccacaaaatggaactccaccaatttaccctaataaagcacctaaccctaatgtggcatcaaattcaacatttgttcaagtaccttcaaat |
30771888 |
T |
|
| Q |
216 |
caatttcaacaacaatatgttggtatgcctcaatttcatcatcaaccacaacatcctattaatgtagctcctcctagtggtactaattatggttatgaat |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30771889 |
caatttcaacaacaatatgttggtatgcctcaatttcatcatcaaccacaacatcctattaatgtagctcctcctagtggtactaattatggttatgaat |
30771988 |
T |
|
| Q |
316 |
atagtggtaatgtggaaggtcaagtgt |
342 |
Q |
| |
|
||||||||||||||||||||||||||| |
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| T |
30771989 |
atagtggtaatgtggaaggtcaagtgt |
30772015 |
T |
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