View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20178_low_8 (Length: 349)
Name: NF20178_low_8
Description: NF20178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20178_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 262; Significance: 1e-146; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 16 - 315
Target Start/End: Original strand, 8100766 - 8101057
Alignment:
| Q |
16 |
caaaagcttgatccacgtatgtttctgaaaacggtggtggtggaattgaattgcttcttcaagaatatgtgaagctcaagtgataaaaatggcaaagctg |
115 |
Q |
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| T |
8100766 |
caaaagcttgatccacgtatgtttctgaaaacggtggtggtggaat-----tgcttcttcaagaatatgtgaagctcaagtgataaaaatggcaaagctg |
8100860 |
T |
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| Q |
116 |
caaagcatgaaaacgaagactactgtaatcttcatgttgatatatcaagtagagagagatgagaagaaataatgttatgtttttctgaaaaaatgagaat |
215 |
Q |
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| T |
8100861 |
caaagcatgaaaacgaagactactgtaatcttcatgttgatatatcaagtagagagagatgagaagaattaatgttatgtttttctgaaaaaatgag--- |
8100957 |
T |
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| Q |
216 |
aataataataccccttttatagacaaggatattaaacctagtccaagacaaggacattaaacggtcgtcgtttccttttatttacattgtcgtttcactc |
315 |
Q |
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| T |
8100958 |
aataataataccccttttatagacaaggatattaaacctagtccaagacaaggacattaaacggtcgtcgtttccttttatttacattgtcgtttcactc |
8101057 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 16 - 241
Target Start/End: Complemental strand, 8100101 - 8099890
Alignment:
| Q |
16 |
caaaagcttgatccacgtatgtttctgaaaacggtggtggtggaattgaattgcttcttcaagaatatgtgaagctcaagtgataaaaatggcaaagctg |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8100101 |
caaaagcttgatccacgtatgtttctgaaaacggtggtggtggaattg-----cttcttcaagaatatgtgaagctcaagtgataaaaatggcaaagc-- |
8100009 |
T |
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| Q |
116 |
caaagcatgaaaacgaagactactgtaatcttcatgttgatatatcaagtagagagagatgagaagaaataatgttatgtttttctgaaaaaatgagaat |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||| |
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| T |
8100008 |
------atgaaaacgaagactactgtaatcttcatgttgatatatcaagtagagagagatgagaagaattaatgttatgtttttctgaaaaaatg-gaat |
8099916 |
T |
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| Q |
216 |
aataataataccccttttatagacaa |
241 |
Q |
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| T |
8099915 |
aataataataccccttttatagacaa |
8099890 |
T |
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