View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20178_low_9 (Length: 303)
Name: NF20178_low_9
Description: NF20178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20178_low_9 |
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Alignment Details
Target: chr6 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 18 - 293
Target Start/End: Original strand, 26216868 - 26217147
Alignment:
| Q |
18 |
caaactaacaaagattaaaataagttgaaacatacatgtattgatgtatatatatgtatagaaatatcagctgtttgatcataaggacttttgatgctgt |
117 |
Q |
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| T |
26216868 |
caaactaacaaagattaaaataagttgaaacatacatgtattgatgtatatatatgtatagaaatatcagctgtttgatcataaggacttttgatgctgt |
26216967 |
T |
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| Q |
118 |
gcaagaaattaattaaccaaattaaaaaacacaagtccctaacttacatataaacacaatgcaagcaatccaatgtcaaaattttaagccaatagttcct |
217 |
Q |
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| T |
26216968 |
gcaagaaattaatgaaccaaatttaaaaacacaagtccctaacttacatataaacacaatgcaagcaatccaatgtcaaaattttaagccaatagttcct |
26217067 |
T |
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| Q |
218 |
agtaaattcatgcagaagctgt----ttcaaaatgaaaatcagaaaagttgaacttcaataatgctttgtagtatctgtg |
293 |
Q |
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| T |
26217068 |
agtaaattcatgcagaagctgtttcattcaaaatgaaaatcagaaaagttgaacttctataatgctttgtagtatctgtg |
26217147 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 148; Significance: 4e-78; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 134 - 293
Target Start/End: Complemental strand, 18212582 - 18212423
Alignment:
| Q |
134 |
ccaaattaaaaaacacaagtccctaacttacatataaacacaatgcaagcaatccaatgtcaaaattttaagccaatagttcctagtaaattcatgcaga |
233 |
Q |
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| T |
18212582 |
ccaaatttaaaaacacaagtccctaacttacatataaacacaatgcaagcaatccaatgtcaaaattttaagtcaatagttcctagtaaattcatgcaga |
18212483 |
T |
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| Q |
234 |
agctgtttcaaaatgaaaatcagaaaagttgaacttcaataatgctttgtagtatctgtg |
293 |
Q |
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| T |
18212482 |
agctgtttcaaaatgaaaatcagaaaagttgaacttctataatgctttgtagtatctgtg |
18212423 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 76 - 130
Target Start/End: Complemental strand, 28847150 - 28847097
Alignment:
| Q |
76 |
tagaaatatcagctgtttgatcataaggacttttgatgctgtgcaagaaattaat |
130 |
Q |
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| T |
28847150 |
tagaaatatcagctgtttgatcataaggac-tatgatgctgtgcaagaaattaat |
28847097 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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