View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20179_high_10 (Length: 585)
Name: NF20179_high_10
Description: NF20179
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20179_high_10 |
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Alignment Details
Target: chr5 (Bit Score: 531; Significance: 0; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 531; E-Value: 0
Query Start/End: Original strand, 15 - 569
Target Start/End: Original strand, 1346730 - 1347284
Alignment:
| Q |
15 |
cacagaccaaacaaagattctgctaatccactcccaaactaaaaagctttgtttttaataagtcaatacgaggagctactagattttgaaaagagtttcc |
114 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
1346730 |
cacaaaccaaacaaagattctgctaatccactcccaaactaaaaagctttgtttttaataagtcaatatgaggagctactagattttgaaaagagtttcc |
1346829 |
T |
|
| Q |
115 |
atgctataacaacaaagcaagtttgggaaatatgctcaaaacatatgaagcagatccaatttaacgaaaaaggttgcaaggcttaaaacaagaatttgag |
214 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
1346830 |
atgctataacaacaaagcaagtttgggaaatatgctcaaaacatatgaagcagatccaatttaacgaaaaaggttacaaggcttaaaacaagaatttgag |
1346929 |
T |
|
| Q |
215 |
ctgattgaattttgcaaaaatgaaagtattcatgattttttacgaatggatacgttggtcaatgaagcgaagaataatataacagaaaaacaagtcatga |
314 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1346930 |
ctgattgaattttgcaaagatgaaagtattcatgattttttacgaatggatacgttggtcaatgaagcgaagaataatataacagaaaaacaagtcatga |
1347029 |
T |
|
| Q |
315 |
agaaaattgtgtatacactaacgagatgaatcaattacgtcatagaagcaattcaagagtcaaaaagatcttatctcaaagaccttgaatgatatgcaag |
414 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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|
| T |
1347030 |
agaaaattgtgtatacactaacgagatgaatcaattacgtcatagaagcaattcaagagtcaaaaagatcttatctcaaagaccttgaatgatttgcaag |
1347129 |
T |
|
| Q |
415 |
catccttggagtcacatgaaatgcgaatgaaagaaagggtcaagtgacacaatcaatcaagcacttcaagctccaacaaaactgacaaattagggatttg |
514 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1347130 |
catccttggagtcacatgaaatgcgaatgaaagaaagggtcaagtgacacaatcaatcaagcacttcaagctccaacaaaactgacaaattagggatttg |
1347229 |
T |
|
| Q |
515 |
tgcaaaggaaggtagaccgcaaaactaaagagggaaaaagttcagaggtagaact |
569 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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|
| T |
1347230 |
tgcaaaggaaggtagaccgcaaaactaaagagggcaaaagttcagaggtagaact |
1347284 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 420 - 532
Target Start/End: Complemental strand, 8675916 - 8675805
Alignment:
| Q |
420 |
ttggagtcacatgaaatgcgaatgaaagaaagggtcaagtgacacaatcaatcaagcacttcaagctccaacaaaactgacaaattagggatttgtgcaa |
519 |
Q |
| |
|
|||||||| ||||||||| ||||| |||||| ||||||||||||||| | ||| || || |||||||||||| ||||||||| ||||||||||| || |
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|
| T |
8675916 |
ttggagtcgcatgaaatgttaatgagtgaaagg-tcaagtgacacaatcgaacaaacatttacagctccaacaaatctgacaaataagggatttgtgtaa |
8675818 |
T |
|
| Q |
520 |
aggaaggtagacc |
532 |
Q |
| |
|
||||||||||||| |
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|
| T |
8675817 |
aggaaggtagacc |
8675805 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 306 - 477
Target Start/End: Complemental strand, 19807748 - 19807579
Alignment:
| Q |
306 |
aagtcatgaagaaaattgtgtatacactaacgagatgaatcaattacgtcatagaagcaattcaagagtcaaaaagatcttatctcaaagaccttgaatg |
405 |
Q |
| |
|
|||||||| ||||||||||| |||||||| || ||| ||||||||| ||| ||||||| ||||||| ||||||||| | | || ||||| ||||| |
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| T |
19807748 |
aagtcatggagaaaattgtgctaacactaacaagctgattcaattacgcattagcagcaattgaagagtc-aaaagatctgaacacagcgacctagaatg |
19807650 |
T |
|
| Q |
406 |
atatgcaagcatccttggagtcacatgaaatgcgaatgaaagaaagggtcaagtgacacaatcaatcaagca |
477 |
Q |
| |
|
|| ||||| || ||||| ||||||||||||||| ||| | |||| |||||||||||||||| |||||||| |
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|
| T |
19807649 |
atttgcaatcacccttgcagtcacatgaaatgcaaataagtgaaa-agtcaagtgacacaatcgatcaagca |
19807579 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 482 - 536
Target Start/End: Complemental strand, 9619623 - 9619569
Alignment:
| Q |
482 |
aagctccaacaaaactgacaaattagggatttgtgcaaaggaaggtagaccgcaa |
536 |
Q |
| |
|
|||||||| |||| ||||||||| || ||||||||||||||| |||||||||||| |
|
|
| T |
9619623 |
aagctccagcaaatctgacaaataagtgatttgtgcaaaggagggtagaccgcaa |
9619569 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 57 - 162
Target Start/End: Original strand, 19652915 - 19653021
Alignment:
| Q |
57 |
aaagctttgtttttaataagtcaatacgaggagctactagattttgaaaagagtttccatgctataacaacaaagcaagtttgggaaa-tatgctcaaaa |
155 |
Q |
| |
|
||||||||||||| |||||||||||| ||| || ||| |||| |||| || | |||||||||||||||||||| || |||| ||| ||||| ||||| |
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|
| T |
19652915 |
aaagctttgttttaaataagtcaatatgagcagataccagatcttgagaaaaaattccatgctataacaacaaatgaaacttggaaaattatgcacaaaa |
19653014 |
T |
|
| Q |
156 |
catatga |
162 |
Q |
| |
|
||||||| |
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|
| T |
19653015 |
catatga |
19653021 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 163 - 274
Target Start/End: Complemental strand, 19807927 - 19807813
Alignment:
| Q |
163 |
agcagatccaatttaacgaaaaaggttgcaaggcttaaaacaagaatttgagctgattgaattttgcaaaaatgaaagtat---tcatgattttttacga |
259 |
Q |
| |
|
||||||||||| ||||| | |||||||| ||||||||| | |||||||| |||||||| || |||| |||||||||| |||| |||||| |||| |
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|
| T |
19807927 |
agcagatccaacataacggacaaggttgcgtggcttaaaaagacaatttgagttgattgaacatttcaaagatgaaagtatttgtcattatttttcacga |
19807828 |
T |
|
| Q |
260 |
atggatacgttggtc |
274 |
Q |
| |
|
||||| | ||||||| |
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|
| T |
19807827 |
atggacaagttggtc |
19807813 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 112; Significance: 2e-56; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 113 - 291
Target Start/End: Complemental strand, 40036960 - 40036781
Alignment:
| Q |
113 |
ccatgctataacaacaaagcaagtttgggaaat-atgctcaaaacatatgaagcagatccaatttaacgaaaaaggttgcaaggcttaaaacaagaattt |
211 |
Q |
| |
|
|||||||||||||| ||| |||| ||||||||| |||||||||||| ||| |||| ||||||||||||||||||||||||||| |||||||||| ||||| |
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|
| T |
40036960 |
ccatgctataacaataaaacaagcttgggaaattatgctcaaaacacatggagcaaatccaatttaacgaaaaaggttgcaagacttaaaacaacaattt |
40036861 |
T |
|
| Q |
212 |
gagctgattgaattttgcaaaaatgaaagtattcatgattttttacgaatggatacgttggtcaatgaagcgaagaataa |
291 |
Q |
| |
|
|||||||||||||||| |||| ||||||| ||||||||||||||||||||||||| |||||||||| || | |||||||| |
|
|
| T |
40036860 |
gagctgattgaattttacaaagatgaaagcattcatgattttttacgaatggatatgttggtcaataaaaccaagaataa |
40036781 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 108 - 379
Target Start/End: Complemental strand, 40031623 - 40031340
Alignment:
| Q |
108 |
agtttccatgctata--acaacaaagcaagtttgggaaat-atgctcaaaacatatgaagcagatccaatttaacgaaaaaggttgcaaggcttaaaaca |
204 |
Q |
| |
|
||||||||||||||| | | ||||||||| ||||||||| |||||||||||| ||| |||| ||||| ||||| ||||||||||||||| ||||||||| |
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|
| T |
40031623 |
agtttccatgctatataatagcaaagcaagcttgggaaattatgctcaaaacacatggagcaaatccagtttaaagaaaaaggttgcaagacttaaaaca |
40031524 |
T |
|
| Q |
205 |
agaatttgagctgattgaattttgcaaaaatgaaagtattcatgattttttacgaatggatacgttggtcaatgaagcgaagaa---------taatata |
295 |
Q |
| |
|
| |||||||||| |||||||||| |||| || ||| ||||| ||||||||||| ||| ||||| ||||||||| || ||||||| ||||| | |
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|
| T |
40031523 |
acaatttgagcttattgaattttacaaagataaaaatattcctgattttttacaaatagatacattggtcaataaaccgaagaataacaatggtaataca |
40031424 |
T |
|
| Q |
296 |
acagaaaaacaagtcatgaagaaaattgtgtatacactaacgagatgaatcaattacgtcatagaagcaattcaagagtcaaaa |
379 |
Q |
| |
|
|||||||||||||||||| |||| ||| || | |||||| | |||||| ||||||||| ||||| |||| ||||||||||||| |
|
|
| T |
40031423 |
acagaaaaacaagtcatggagaagattatgcaaacactatcaagatgattcaattacgccatagcagcatctcaagagtcaaaa |
40031340 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 423 - 566
Target Start/End: Original strand, 32241112 - 32241253
Alignment:
| Q |
423 |
gagtcacatgaaatgcgaatgaaagaaagggtcaagtgacacaatcaatcaagcacttcaagctccaacaaaa-ctgacaaattagggatttgtgcaaag |
521 |
Q |
| |
|
||||||||||||||| |||||| |||||| || ||||||| |||| | ||| || || ||||||| ||||| |||||| || |||||||||||||||| |
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|
| T |
32241112 |
gagtcacatgaaatgtgaatgagtgaaagg-tcgagtgacataatcgaccaaacatttaaagctccttcaaaatctgacagatgagggatttgtgcaaag |
32241210 |
T |
|
| Q |
522 |
gaaggtagaccgcaaaactaaagagggaaaaagttcagaggtaga |
566 |
Q |
| |
|
|| |||||||| | ||| |||||||| |||| || ||||||||| |
|
|
| T |
32241211 |
gatggtagacctc--aaccaaagagggcaaaactttagaggtaga |
32241253 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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