View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20179_high_14 (Length: 549)
Name: NF20179_high_14
Description: NF20179
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20179_high_14 |
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Alignment Details
Target: chr1 (Bit Score: 510; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 510; E-Value: 0
Query Start/End: Original strand, 17 - 534
Target Start/End: Complemental strand, 8408434 - 8407917
Alignment:
| Q |
17 |
attctgccatcctgcaaataagaaagctcaaccataagtagcaattcacatagagaagcacttattaaaggtcaatactcaatagtatagtatatgtgac |
116 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
8408434 |
attctgccatcctgcaaataagaaagctcaaccataagtagcaattcacatagagaagcacttataaaaggtcaatactcaatagtatagtatatgtgac |
8408335 |
T |
|
| Q |
117 |
atacattgtcggtgtcaacatcatcaatgacttcatctatagttgcttcatctcccatttgatattcagccaaagcttgtctaagttcctctcttgttac |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8408334 |
atacattgtcggtgtcaacatcatcaatgacttcatctatagttgcttcatctcccatttgatattcagccaaagcttgtctaagttcctctcttgttac |
8408235 |
T |
|
| Q |
217 |
ataactgaacagtcacccaaacaaaacttaagataagcaagaatctgagaaatagacgaaaaatctgataatactgaatttttatggaccaaatctgtct |
316 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8408234 |
ataactgaacagtcacccaaacaaaacttaaggtaagcaagaatctgagaaatagacgaaaaatctgataatactgaatttttatggaccaaatctgtct |
8408135 |
T |
|
| Q |
317 |
tgattttatcatctgaattacttgttaatcaagcaatgtgtgtcatagttaaggataaagcaaaggaaccaaatactgacccgctgttatccttgtcaaa |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8408134 |
tgattttatcatctgaattacttgttaatcaagcaatgtgtgtcatagttaaggataaagcaaaggaaccaaatactgacccgctgttatccttgtcaaa |
8408035 |
T |
|
| Q |
417 |
gtattgaaaagccttgaacaaattctcttccctctcaagtttatgccggtttattgtggcagtaatgaattcatgatagtcaatagttccattcttgtca |
516 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8408034 |
gtattgaaaagccttgaacaaattctcttccctctcaagtttatgccggtttattgtggcagtaatgaattcatgatagtcaatagttccattcttgtca |
8407935 |
T |
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| Q |
517 |
acatcagcctgaccaaac |
534 |
Q |
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|||||||||||||||||| |
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| T |
8407934 |
acatcagcctgaccaaac |
8407917 |
T |
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